Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00781
(758 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0277 + 26885621-26886064,26886148-26886317,26887038-268879... 34 0.11
12_01_1096 + 11494100-11494263,11494489-11494633,11494694-11494741 31 0.75
03_06_0334 + 33208266-33208481,33208789-33208940,33209141-332092... 31 1.3
05_01_0041 + 281427-281549,281671-281730,281822-281868,282013-28... 30 2.3
01_01_0483 - 3550429-3551184 30 2.3
06_01_1104 + 9097108-9097779 29 4.0
01_03_0256 + 14288885-14288936,14289362-14291335,14291648-142916... 29 4.0
04_04_1689 + 35379627-35379746,35379823-35380344,35380428-353805... 29 5.3
04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355 29 5.3
01_05_0356 - 21338488-21340062 29 5.3
08_02_0292 - 15420378-15421229 28 7.0
06_02_0214 + 13141213-13143741 28 7.0
04_04_1681 + 35322992-35323765 28 7.0
04_04_1457 - 33741048-33741146,33741647-33741760,33741938-337420... 28 7.0
02_04_0295 + 21682029-21683534 28 7.0
12_02_1041 + 25626210-25626595,25628607-25630542,25630572-25630613 28 9.3
05_07_0351 + 29468247-29469851 28 9.3
04_04_1237 - 31991817-31992569,31993452-31993550,31994343-319949... 28 9.3
02_02_0521 - 11156594-11156956,11157097-11157483,11158327-111583... 28 9.3
>05_06_0277 +
26885621-26886064,26886148-26886317,26887038-26887941,
26888544-26888575,26888862-26888928,26889116-26889173,
26889329-26889421,26890366-26890480,26890847-26890894,
26891012-26891057,26891161-26891231,26891865-26891870,
26891991-26892038,26892439-26892488,26892892-26893154
Length = 804
Score = 34.3 bits (75), Expect = 0.11
Identities = 22/57 (38%), Positives = 27/57 (47%)
Frame = -2
Query: 469 PSRTCPSPNQWRST*RRRGRAPWPVGDTPLPRSGLNLLESRGTTELCRRTGSPY*SP 299
P+R SP + RS RR R+P P +P RS + S RR GSP SP
Sbjct: 229 PARDRGSPPRRRSPPARRERSPAPRSRSPRRRSPVKTTSSHRERSPVRRNGSPRRSP 285
>12_01_1096 + 11494100-11494263,11494489-11494633,11494694-11494741
Length = 118
Score = 31.5 bits (68), Expect = 0.75
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +2
Query: 140 GGGSLIHPNVVLTAAHYVAAAKELKIRAGEWDTQNTKE 253
G S++HPNV +T + A WDTQ TKE
Sbjct: 67 GYSSMMHPNVEITRTGFRAVTTCRLPLTNPWDTQQTKE 104
>03_06_0334 +
33208266-33208481,33208789-33208940,33209141-33209221,
33209371-33209491
Length = 189
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = -2
Query: 712 PMPQATMPYWT*RFFS*SMGHTRGDPPSPRQVS 614
P P PY RFFS S+ +RG PSP+Q S
Sbjct: 51 PPPPPLTPY---RFFSSSVSESRGTSPSPKQES 80
>05_01_0041 +
281427-281549,281671-281730,281822-281868,282013-282089,
285368-285440,286193-286281,286665-286711,286805-286885,
287011-287179,287381-287600,287679-287744,288194-288310,
288591-288628,288935-289032
Length = 434
Score = 29.9 bits (64), Expect = 2.3
Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = -1
Query: 263 YGYSPSCS-ACPIRRL*SSVP*RRQRSERP*APRSDGSASLPLRKRS 126
+G +PS PIRR S P RR RS R +PR D + P+R+RS
Sbjct: 300 HGGTPSRRPGSPIRRRSPSPPPRRLRSPRHLSPRRDRGS--PIRRRS 344
>01_01_0483 - 3550429-3551184
Length = 251
Score = 29.9 bits (64), Expect = 2.3
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 7/61 (11%)
Frame = +2
Query: 497 RWTCGRG--PEHLPEPVEEDAAGAV-----LPVALDVHVRGGGARQGHLPGGRGVAPRVP 655
R+ CG P LP A A+ L A+ + GGG R G + GG G+AP P
Sbjct: 132 RYACGEVGIPTALPVTAAPRLAAAMPAPGQLAAAVSAGMYGGGRRLGVIDGG-GIAPPSP 190
Query: 656 H 658
H
Sbjct: 191 H 191
>06_01_1104 + 9097108-9097779
Length = 223
Score = 29.1 bits (62), Expect = 4.0
Identities = 20/72 (27%), Positives = 25/72 (34%)
Frame = +2
Query: 446 GGRTSSGRKVDTRSS*RRWTCGRGPEHLPEPVEEDAAGAVLPVALDVHVRGGGARQGHLP 625
GGR+ +GR R R W G E +++ V D G G R G
Sbjct: 84 GGRSGAGRGSRRRRDGRPWRRRGGAEREAAGADDERRRPVAETVADEAAAGRGRRGGRSG 143
Query: 626 GGRGVAPRVPHR 661
G G R R
Sbjct: 144 AGEGSRRRRTER 155
>01_03_0256 + 14288885-14288936,14289362-14291335,14291648-14291673,
14291855-14292025,14292560-14292647,14292711-14292802,
14292920-14293384,14293860-14294633,14294890-14295087,
14296940-14297374,14297455-14297688,14298042-14298323
Length = 1596
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 32 VDGETKFGEFPWMVAILKVEPVDDNEP 112
+DGE EFP+ + VE DD+EP
Sbjct: 1197 LDGEESLAEFPYASFLQTVETSDDSEP 1223
>04_04_1689 +
35379627-35379746,35379823-35380344,35380428-35380526,
35380608-35380979
Length = 370
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +1
Query: 205 GTEDQSRRMGHAEHEGEYPYQDRTVKEIVIHKDFNKGNL 321
GT+D AE E E DRTV+E+ D + NL
Sbjct: 329 GTDDDDDDQQPAEEEDEEDDYDRTVREVHASVDLDMSNL 367
>04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355
Length = 1109
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/22 (63%), Positives = 14/22 (63%), Gaps = 3/22 (13%)
Frame = +2
Query: 593 RGGGA---RQGHLPGGRGVAPR 649
RGGG R G PGGRGV PR
Sbjct: 37 RGGGRNGPRGGRFPGGRGVEPR 58
>01_05_0356 - 21338488-21340062
Length = 524
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -2
Query: 415 GRAPWPVGDTPLPRSGLNLLESRG 344
G+ P P G TPLP G NLL+ RG
Sbjct: 35 GKPPLPPGPTPLPLIG-NLLDLRG 57
>08_02_0292 - 15420378-15421229
Length = 283
Score = 28.3 bits (60), Expect = 7.0
Identities = 20/72 (27%), Positives = 25/72 (34%)
Frame = +2
Query: 446 GGRTSSGRKVDTRSS*RRWTCGRGPEHLPEPVEEDAAGAVLPVALDVHVRGGGARQGHLP 625
GGR+ +GR R R W G E +++ V D G G R G
Sbjct: 144 GGRSGAGRGSRRRRDGRPWRRRGGAEREAAGADDERRRPVAETVADEAAAGRGRRGGRSG 203
Query: 626 GGRGVAPRVPHR 661
G G R R
Sbjct: 204 AGGGSRRRRTER 215
>06_02_0214 + 13141213-13143741
Length = 842
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +2
Query: 86 VEPVDDNEPEGQKLNVYVGGGS--LIHPNVVLTAAHYVAAA 202
V P E G K+N GGGS LI P++V + A +AA+
Sbjct: 246 VNPSVTREVNGGKVNYMKGGGSTPLIAPDIVYSTATELAAS 286
>04_04_1681 + 35322992-35323765
Length = 257
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +3
Query: 519 RNTCQSQLRRTRLGRFFQLHSTFMCAGGEPDKDTCRGDGGSPLVC-PIDYEK 671
R++C S+L + GR S C + D+ CRG G+P C P Y K
Sbjct: 154 RDSCPSELSKKVNGRTVACRSA--CDVFDTDQYCCRGMYGNPSTCQPTFYSK 203
>04_04_1457 -
33741048-33741146,33741647-33741760,33741938-33742052,
33742154-33742560,33743342-33743476,33743576-33743970,
33744225-33744916,33745014-33745097,33745195-33745286,
33745374-33745457,33745535-33745714,33746258-33746302,
33746399-33746692,33747199-33747585,33747713-33747899,
33748042-33748118,33748936-33749067,33749315-33749416,
33749744-33749827,33749902-33749992,33750105-33750178,
33750644-33750664,33751433-33751477,33752427-33752561,
33752693-33752752
Length = 1376
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 351 DSSRFSPERGSGVSPTGQGARPRRR 425
+++RF+ GSG S T G+ PRRR
Sbjct: 772 EATRFASISGSGASVTQNGSTPRRR 796
>02_04_0295 + 21682029-21683534
Length = 501
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/26 (57%), Positives = 15/26 (57%)
Frame = -2
Query: 421 RRGRAPWPVGDTPLPRSGLNLLESRG 344
R R P P G TPLP G NLL RG
Sbjct: 34 RSSRPPLPPGPTPLPLIG-NLLSLRG 58
>12_02_1041 + 25626210-25626595,25628607-25630542,25630572-25630613
Length = 787
Score = 27.9 bits (59), Expect = 9.3
Identities = 17/48 (35%), Positives = 20/48 (41%)
Frame = +2
Query: 509 GRGPEHLPEPVEEDAAGAVLPVALDVHVRGGGARQGHLPGGRGVAPRV 652
G G + E + D AG V V V GG R+ HL G G V
Sbjct: 724 GEGEQEAAECIGADEAGDERTVGGRVAVVRGGGRREHLEGEHGAGREV 771
>05_07_0351 + 29468247-29469851
Length = 534
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -2
Query: 568 KNRPSRVLLNWLWQVFRSTTARXXXXXXPGIYLPSRTCPSPNQ 440
K++ ++V++NW S+ R + LP TC SP+Q
Sbjct: 175 KSKVTKVIMNWYRPAKSSSWRRFRCSQRACMDLPYNTCESPDQ 217
>04_04_1237 -
31991817-31992569,31993452-31993550,31994343-31994976,
31995329-31995585
Length = 580
Score = 27.9 bits (59), Expect = 9.3
Identities = 22/55 (40%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Frame = +2
Query: 509 GRGPEHLPEPVEEDAAGAVLPVALDVH-VRG---GGARQGHLPGGRGVAPRVPHR 661
G G + V+ AG V P DV VRG GG R+G GG V RV R
Sbjct: 451 GGGRREQRQQVDVRGAGGVRPAGGDVRRVRGRGGGGRRRGRGAGGDYVHVRVQQR 505
>02_02_0521 -
11156594-11156956,11157097-11157483,11158327-11158383,
11159671-11159970
Length = 368
Score = 27.9 bits (59), Expect = 9.3
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Frame = +2
Query: 515 GPEHLPEPVEEDAAGAVLPVALDVHVRGGGARQGHLPGGRGV---APRVP 655
G HLP P+ + A V + V G G G GG GV AP VP
Sbjct: 27 GVSHLPRPILVKPSSAAAAVNVVVVSAGSGGGAGGGGGGVGVVAGAPAVP 76
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,552,774
Number of Sequences: 37544
Number of extensions: 577894
Number of successful extensions: 2292
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 2175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2289
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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