Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00781
(758 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like p... 56 4e-08
U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like p... 48 7e-06
U28735-5|AAF99955.3| 279|Caenorhabditis elegans Hypothetical pr... 36 0.024
AL032637-6|CAA21620.2| 422|Caenorhabditis elegans Hypothetical ... 31 0.67
AF251308-1|AAF82360.1| 1413|Caenorhabditis elegans guanine nucle... 31 0.67
AC006692-9|AAF39972.5| 1493|Caenorhabditis elegans Drosophila so... 31 0.67
Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical pr... 30 2.1
Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical pr... 30 2.1
Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical p... 30 2.1
Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical p... 30 2.1
U39848-2|AAT81211.1| 279|Caenorhabditis elegans Hypothetical pr... 28 6.3
AL033514-30|CAA22091.1| 313|Caenorhabditis elegans Hypothetical... 28 6.3
>U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like
protease protein 1 protein.
Length = 293
Score = 55.6 bits (128), Expect = 4e-08
Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Frame = +3
Query: 582 TFMCAGGEPDK-DTCRGDGGSPLVCPIDYEKNRYVQYGIVAWGIGCGEDGTPGVYVDV 752
+ +CAG K D+C+GD G PL+C D + G+V+WGIGC G PGVY +V
Sbjct: 223 SMLCAGYSYGKIDSCQGDSGGPLMCARD---GHWELTGVVSWGIGCARPGMPGVYGNV 277
Score = 31.9 bits (69), Expect = 0.51
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Frame = +1
Query: 232 GHAEHEGEYPYQDRTVKEIVIHKDFNKG-NLFYDIALLFLETPVDSAPNVGVACLP--PA 402
GH G P++ V + IH +N G YD A++ + PV+++ CLP PA
Sbjct: 116 GHRSGSGS-PHR---VTAVSIHPWYNIGFPSSYDFAIMRIHPPVNTSTTARPICLPSLPA 171
Query: 403 RERAPAGVRCFATGWG 450
E C TGWG
Sbjct: 172 VENR----LCVVTGWG 183
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/18 (77%), Positives = 14/18 (77%)
Frame = +2
Query: 143 GGSLIHPNVVLTAAHYVA 196
GGSLI PN VLTAAH A
Sbjct: 85 GGSLIDPNFVLTAAHCFA 102
>U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like
protease protein 2 protein.
Length = 265
Score = 48.0 bits (109), Expect = 7e-06
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +3
Query: 591 CAGG-EPDKDTCRGDGGSPLVCPIDYEKNRYVQYGIVAWGIGCGEDGTPGVYVDVS 755
CAG E D+C+GD G P C E +V G+++WG GC + PG+Y V+
Sbjct: 197 CAGYLEGGIDSCQGDSGGPFACR--REDGAFVLAGVISWGDGCAQKKQPGIYTMVA 250
>U28735-5|AAF99955.3| 279|Caenorhabditis elegans Hypothetical
protein F48E3.4 protein.
Length = 279
Score = 36.3 bits (80), Expect = 0.024
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = +3
Query: 621 CRGDGGSPLVCPIDYEKNRYVQYGIVA 701
C D G+PL C +D E N+YVQ GIV+
Sbjct: 197 CWDDIGAPLECVLDVENNKYVQVGIVS 223
>AL032637-6|CAA21620.2| 422|Caenorhabditis elegans Hypothetical
protein Y43F8C.6 protein.
Length = 422
Score = 31.5 bits (68), Expect = 0.67
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = -1
Query: 470 SFPNLSFPQPVAKHLTPAGARSLAGGRHATPTFGAESTG 354
S P+ S P P + + T AG +L HA P GA TG
Sbjct: 268 SGPSSSAPGPSSSYSTGAGGGALLSTGHAVPIMGAGGTG 306
>AF251308-1|AAF82360.1| 1413|Caenorhabditis elegans guanine
nucleotide exchange factorfor RAS protein.
Length = 1413
Score = 31.5 bits (68), Expect = 0.67
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -3
Query: 489 DDLVSTFLPELVLP-PTSGEAPDAGGGALPGRWETRHSH 376
+DL S L +P P + P GGG L GR++T SH
Sbjct: 697 NDLFSLLLERFNIPTPKKLQQPKQGGGPLAGRYDTVQSH 735
>AC006692-9|AAF39972.5| 1493|Caenorhabditis elegans Drosophila sos
homolog protein 1 protein.
Length = 1493
Score = 31.5 bits (68), Expect = 0.67
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -3
Query: 489 DDLVSTFLPELVLP-PTSGEAPDAGGGALPGRWETRHSH 376
+DL S L +P P + P GGG L GR++T SH
Sbjct: 697 NDLFSLLLERFNIPTPKKLQQPKQGGGPLAGRYDTVQSH 735
>Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical
protein F53B7.5b protein.
Length = 2892
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +3
Query: 579 STFMCAGGEPDKDTCRGDGGSPLVCPIDYEKNRY--VQYGIVAWG 707
S C+GG+ DTC G+ LVC K Y + +G A+G
Sbjct: 86 SPLFCSGGQ---DTCEGEMSETLVCGTTTTKEPYSTIVFGTTAYG 127
>Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical
protein F53B7.5a protein.
Length = 3095
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +3
Query: 579 STFMCAGGEPDKDTCRGDGGSPLVCPIDYEKNRY--VQYGIVAWG 707
S C+GG+ DTC G+ LVC K Y + +G A+G
Sbjct: 86 SPLFCSGGQ---DTCEGEMSETLVCGTTTTKEPYSTIVFGTTAYG 127
>Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical
protein F53B7.5b protein.
Length = 2892
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +3
Query: 579 STFMCAGGEPDKDTCRGDGGSPLVCPIDYEKNRY--VQYGIVAWG 707
S C+GG+ DTC G+ LVC K Y + +G A+G
Sbjct: 86 SPLFCSGGQ---DTCEGEMSETLVCGTTTTKEPYSTIVFGTTAYG 127
>Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical
protein F53B7.5a protein.
Length = 3095
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +3
Query: 579 STFMCAGGEPDKDTCRGDGGSPLVCPIDYEKNRY--VQYGIVAWG 707
S C+GG+ DTC G+ LVC K Y + +G A+G
Sbjct: 86 SPLFCSGGQ---DTCEGEMSETLVCGTTTTKEPYSTIVFGTTAYG 127
>U39848-2|AAT81211.1| 279|Caenorhabditis elegans Hypothetical
protein B0286.6 protein.
Length = 279
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 322 FYDIALLFLETPVDSAPNVGVACLPPA 402
F DIA+ LE P++ + ++ ACLP A
Sbjct: 120 FNDIAVFELEEPIEFSKDIFPACLPSA 146
>AL033514-30|CAA22091.1| 313|Caenorhabditis elegans Hypothetical
protein Y75B8A.31 protein.
Length = 313
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Frame = +1
Query: 253 EYPYQDRTVKE----IVIHKDFNKGNLFYDIALLFLETPVDSAPNVGVACLPPARERA 414
+ PY +R ++ +V++ + N+ D L + TPV+ A V +AC+ P+ ++
Sbjct: 117 QIPYIERAIENGWGVVVMNTNLNESK---DQDLKYSRTPVEHAETVWIACIEPSNAKS 171
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,968,431
Number of Sequences: 27780
Number of extensions: 395301
Number of successful extensions: 1194
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1193
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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