Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00781
         (758 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    36   5e-04
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.8  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          23   4.1  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   4.1  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   7.2  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   9.5  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 35.5 bits (78), Expect = 5e-04
 Identities = 18/45 (40%), Positives = 25/45 (55%)
 Frame = +3

Query: 588 MCAGGEPDKDTCRGDGGSPLVCPIDYEKNRYVQYGIVAWGIGCGE 722
           MCA  +  KD C+ D G P++      K R V  GI++WG  CG+
Sbjct: 335 MCAYAK-GKDACQMDSGGPVLWQNPRTK-RLVNIGIISWGAECGK 377



 Score = 27.9 bits (59), Expect = 0.11
 Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
 Frame = +1

Query: 328 DIALLFLETPVDSAPNVGVACLPPAR-ERAPAGVRCFATGWGKDKFGKEGRYQVIMKKVD 504
           DIALL  E  +     VG ACLP      + AG      GWG   F   G    I++K  
Sbjct: 257 DIALLKTEKDIKFGDKVGPACLPFQHFLDSFAGSDVTVLGWGHTSF--NGMLSHILQKTT 314

Query: 505 VRSWT 519
           +   T
Sbjct: 315 LNMLT 319



 Score = 22.2 bits (45), Expect = 5.4
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +2

Query: 143 GGSLIHPNVVLTAAHYV--AAAKELKIRAGEWDTQNTKE 253
           G ++I    VLTAAH +      +L I  GE D  +  E
Sbjct: 189 GATIISKRYVLTAAHCIIDENTTKLAIVVGEHDWSSKTE 227


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -2

Query: 646 RGDPPSPRQVSLSGSPP 596
           RG PP+P Q    G PP
Sbjct: 36  RGSPPNPSQGPPPGGPP 52



 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -2

Query: 637 PPSPRQVSLSGSPP 596
           PP P   ++SG PP
Sbjct: 418 PPIPNMSNMSGMPP 431


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 411 RPRRRQVLRHWLGEGQVREGR*IPGHHEE 497
           R   R+  R   G G+ RE R IP H+ E
Sbjct: 308 RETSRERSRDRRGRGRSREHRIIPSHYIE 336


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 7/27 (25%), Positives = 17/27 (62%)
 Frame = +1

Query: 205 GTEDQSRRMGHAEHEGEYPYQDRTVKE 285
           G+E++  ++  + +   YP Q+R+ +E
Sbjct: 10  GSEEEGNQLNRSFYSASYPPQNRSQEE 36


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 509 RTSTFFMMTWYLPS 468
           R   FFMM +Y+PS
Sbjct: 229 REMGFFMMDYYIPS 242


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 358 VDSAPNVGVACLPPARERAPAG 423
           + SAP+   +  PPA+  A AG
Sbjct: 517 IASAPSSSTSSSPPAKGAAAAG 538


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,917
Number of Sequences: 438
Number of extensions: 4985
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)