Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00780
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...    28   1.5  
SPBC1D7.01 |||prefoldin subunit 1 |Schizosaccharomyces pombe|chr...    27   2.5  
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|...    25   7.8  
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    25   7.8  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    25   7.8  
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    25   7.8  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   7.8  

>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +3

Query: 162 GDFSVIDTEFSS-IRERFDAEMRKMEEEMSK 251
           G F+ +D+E    IRE  +AE++KMEE+  K
Sbjct: 468 GVFTRVDSELGRRIREATEAEVKKMEEKAPK 498


>SPBC1D7.01 |||prefoldin subunit 1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 112

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 16/71 (22%), Positives = 33/71 (46%)
 Frame = +3

Query: 117 KMADSGLKRNIPIKLGDFSVIDTEFSSIRERFDAEMRKMEEEMSKFDQNS*TEKATISSR 296
           ++ D G  + +   LG    + ++ +S+R   DAEM  + E++    +     + T S+ 
Sbjct: 42  ELEDVGEDKAVYTSLGKM-FMKSDLASVRTHLDAEMASLREDIEALQKKQTYHETTASNA 100

Query: 297 AQLARRHLHSI 329
            Q  ++   SI
Sbjct: 101 EQHLQKIKESI 111


>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
           Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 624

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/57 (22%), Positives = 26/57 (45%)
 Frame = +3

Query: 132 GLKRNIPIKLGDFSVIDTEFSSIRERFDAEMRKMEEEMSKFDQNS*TEKATISSRAQ 302
           G++  +   L + +++    S  +  FDAE  K+E E+ +   +S      +  R Q
Sbjct: 507 GIESRLTSVLSECNMLRETASEEKNAFDAESDKLERELQQLKLSSHNSMLQLDQRIQ 563


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 365 DSLNSPLIQDEGDGKTLKLRFDVSQYTPEEIVVKTVDNK 481
           +S+ SP +  EG   +LK R   +  TP+  +  T+D K
Sbjct: 554 NSITSPGVLPEGMAASLKKRTTNTAATPQAALPTTLDTK 592


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +2

Query: 410 TLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEENLIRNLCTE 535
           T  L+  V + T ++   KT+D +LL+   +E   I N C E
Sbjct: 95  TRSLQLSVKKTTRQQ---KTLDGQLLILKDNERTTISNRCAE 133


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
 Frame = +2

Query: 500 HEENLIR---NLCTENTTGSFCCPREQILRPLSLRCPGTVCLPWKRHWPQLAITDRNIP 667
           H+ N I+   +L  E  + +   P+ QI + +  R  GT   P K    Q  +TD N P
Sbjct: 55  HKSNKIKTPTSLADEKKSHNELDPKAQIKKLMETRSGGTYIPPAKLKALQAQLTDVNTP 113


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 143  KYPHQAWRFFGYRY 184
            +YP  AW+FF  RY
Sbjct: 1511 RYPEDAWKFFMVRY 1524


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,734,072
Number of Sequences: 5004
Number of extensions: 54754
Number of successful extensions: 164
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)