Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00780
         (686 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0484 + 8805053-8805538                                           35   0.070
03_02_0485 - 8808139-8808618                                           33   0.16 
03_02_0483 - 8804021-8804485                                           33   0.16 
03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015           30   2.0  
01_06_1473 - 37619415-37619561,37619649-37619723,37619800-376199...    29   2.6  
07_03_1498 + 26995209-26995752,26995945-26996513                       29   4.6  
12_01_1050 + 10798692-10798867,10798972-10799169,10799617-108006...    28   8.0  

>03_02_0484 + 8805053-8805538
          Length = 161

 Score = 34.7 bits (76), Expect = 0.070
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
 Frame = +1

Query: 481 ITGPRQTRGESDTKSVYR------EYNREFLLPKGTNPEAIKSSLSRDGVLTVEAP 630
           I+G R    E  T   +R      ++ R F LP+ T PE IK+S+  +GVLTV  P
Sbjct: 91  ISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASM-ENGVLTVTVP 145


>03_02_0485 - 8808139-8808618
          Length = 159

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 16/32 (50%), Positives = 22/32 (68%)
 Frame = +1

Query: 535 EYNREFLLPKGTNPEAIKSSLSRDGVLTVEAP 630
           ++ R F LP+ T PE IK+S+  +GVLTV  P
Sbjct: 113 KFLRRFRLPENTKPEQIKASM-ENGVLTVTVP 143


>03_02_0483 - 8804021-8804485
          Length = 154

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 16/32 (50%), Positives = 22/32 (68%)
 Frame = +1

Query: 535 EYNREFLLPKGTNPEAIKSSLSRDGVLTVEAP 630
           ++ R F LP+ T PE IK+S+  +GVLTV  P
Sbjct: 108 KFLRRFRLPENTKPEQIKASM-ENGVLTVTVP 138


>03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015
          Length = 327

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = +2

Query: 401 DGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEE 508
           D K +++RFD+   + EE+ V   D+ L++  +H++
Sbjct: 140 DDKEVRMRFDMPGLSREEVKVMVEDDALVIRGEHKK 175


>01_06_1473 -
           37619415-37619561,37619649-37619723,37619800-37619919,
           37620074-37620127,37620204-37620426,37620506-37620585,
           37620675-37620764,37620847-37620960,37621192-37621272,
           37621383-37621490,37621677-37621722,37621802-37621899,
           37621975-37622148,37622456-37622548,37623229-37623285,
           37623399-37623438,37623567-37623685,37624179-37624298,
           37624723-37624815,37624940-37625251,37625325-37625444,
           37625545-37625658,37625731-37625910,37625996-37626110,
           37626195-37626358,37626584-37626769,37626888-37626978,
           37627089-37627153,37627223-37627297,37627410-37627493,
           37627575-37627742,37628160-37629293
          Length = 1579

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 21/67 (31%), Positives = 34/67 (50%)
 Frame = +3

Query: 21  PSSAYYSSET*FTRERFSVCLVSTISTRQIT*KMADSGLKRNIPIKLGDFSVIDTEFSSI 200
           PSS+ +  +T    E+ S    S+ S R    ++A SGLK  I  KL DF+V +   + +
Sbjct: 403 PSSSIFPRDTISRLEKNSTTSDSSPSLRASLHELA-SGLKSEIADKLSDFNVSNFAMTPV 461

Query: 201 RERFDAE 221
           +  +  E
Sbjct: 462 KRNYAFE 468


>07_03_1498 + 26995209-26995752,26995945-26996513
          Length = 370

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +2

Query: 338 RQLAEPSHWDSLNSPLIQDEGDGKTLKLRFDVSQYTPEE 454
           ++L  P HW  +  P + + G G+    RF  +  TP E
Sbjct: 245 KELEAPQHWSEMRCPQLANLGSGRFCIARFFHTWTTPME 283


>12_01_1050 +
           10798692-10798867,10798972-10799169,10799617-10800649,
           10800866-10801219
          Length = 586

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = -3

Query: 636 GQWRFHGKHTVPGQRRLNGLRI-CSLGQQKLPVVFSVHRFRIRFSSCLAWTSNLLSTVLT 460
           G +  H     P + R+ G R    +  + +P V ++H + +RFS   A  SNL  + L 
Sbjct: 2   GGFSLHRVAPYPHRARVQGCRSGAGVHHRAMPTVPAIHVWAVRFSLDFAVASNL--SGLR 59

Query: 459 TISS 448
           TIS+
Sbjct: 60  TISA 63


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,413,972
Number of Sequences: 37544
Number of extensions: 345387
Number of successful extensions: 978
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)