Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00780
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   2.7  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   6.3  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   6.3  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   6.3  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   6.3  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 13/59 (22%), Positives = 32/59 (54%)
 Frame = +3

Query: 84  VSTISTRQIT*KMADSGLKRNIPIKLGDFSVIDTEFSSIRERFDAEMRKMEEEMSKFDQ 260
           ++ +S    +  +  +G ++++ +KL     +D E    + + +  MRK++EEM + D+
Sbjct: 340 INDLSMHDFSRDLMLAGTQQSVELKLA----LDQEQLKSK-KLEESMRKLDEEMKRTDE 393


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +2

Query: 407 KTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEENLIRNLCTE 535
           K  K   DV    PE++ +   DNKL  +A +  N+I  + T+
Sbjct: 74  KVGKKEADVVAVDPEDMYLAVKDNKLASNAGY--NVIEQVRTK 114


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +2

Query: 407 KTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEENLIRNLCTE 535
           K  K   DV    PE++ +   DNKL  +A +  N+I  + T+
Sbjct: 74  KVGKKEADVVAVDPEDMYLAVKDNKLASNAGY--NVIEQVRTK 114


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +2

Query: 407 KTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEENLIRNLCTE 535
           K  K   DV    PE++ +   DNKL  +A +  N+I  + T+
Sbjct: 74  KVGKKEADVVAVDPEDMYLAVKDNKLASNAGY--NVIEQVRTK 114


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -2

Query: 481 FVVDSLNNDLF 449
           F+VD L NDLF
Sbjct: 96  FIVDRLRNDLF 106


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,356
Number of Sequences: 438
Number of extensions: 3534
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)