Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00778
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr 1|||Ma...    27   2.0  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.4  
SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces pomb...    25   7.9  
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S...    25   7.9  
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy...    25   7.9  

>SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 397

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 140 NSARDRYTVPWGFNGFINYI 81
           NS  DRYT+P+   G I+Y+
Sbjct: 339 NSGSDRYTIPFFLQGNIDYV 358


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +1

Query: 337 FHIILFLLDYVFYFPF 384
           FH++LF+L YV  +PF
Sbjct: 21  FHLVLFVLSYVLGWPF 36


>SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 141 KVKPGFEKYYVLSSFQCSSGCMYPNYTV 224
           K+  GF+K+Y    F C  G + P + +
Sbjct: 76  KIVSGFKKFYHNKPFLCDHGGILPKFEI 103


>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 643 SITPKIITFSNMKPKLKYNFYLHVFLLTNLY 551
           S  P+I+ F   +P LKYN Y  +    N Y
Sbjct: 201 STCPRILEFMPYEPLLKYNSYRLLSTYENSY 231


>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = -2

Query: 595 KYNFYLHVFLLTNLYHSNI 539
           ++N  +HVFL+ ++YHS+I
Sbjct: 434 EWNKPVHVFLMRHVYHSSI 452


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,476,370
Number of Sequences: 5004
Number of extensions: 47770
Number of successful extensions: 103
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)