Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00778
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35719-2|CAA84799.2|  715|Caenorhabditis elegans Hypothetical pr...    28   5.6  
U21310-5|AAY86191.1|  148|Caenorhabditis elegans Hypothetical pr...    28   7.4  
Z99288-9|CAB16551.2|  335|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>Z35719-2|CAA84799.2|  715|Caenorhabditis elegans Hypothetical
           protein F17C8.3 protein.
          Length = 715

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +3

Query: 240 NVIISSHVTVDNYKSESQTLYCQESVNKHGLYIPYYFV 353
           N+I+S+H T   +KS    +YC E V++     P+ F+
Sbjct: 373 NLIVSTHFTDTMWKSCKPIVYCSEIVSQIVNQSPFIFL 410


>U21310-5|AAY86191.1|  148|Caenorhabditis elegans Hypothetical
           protein F40H6.6 protein.
          Length = 148

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = +1

Query: 340 HIILFLL-DYVFYFPFYFRRLCFHHIKIY 423
           H+++ L+ D+ F+F FYF    F+ IKIY
Sbjct: 106 HVVIRLIFDFSFFFKFYF---IFYKIKIY 131


>Z99288-9|CAB16551.2|  335|Caenorhabditis elegans Hypothetical
           protein ZK262.10 protein.
          Length = 335

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = -2

Query: 691 FFLH*LFSKYFINTIHSITPKIITFSNMKPKLKYNFYLHVFLLT 560
           F++  + S+     +H +   I  + ++ PK+ +N  L VFL++
Sbjct: 162 FYMAQVISEVLSQNVHEMNILIAVYEDLSPKVTWNSRLGVFLVS 205


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,452,264
Number of Sequences: 27780
Number of extensions: 262243
Number of successful extensions: 592
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)