Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00772X
         (575 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal prote...    66   2e-11
Z83102-9|CAI79156.1|   82|Caenorhabditis elegans Hypothetical pr...    31   0.59 
Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein.      30   1.4  
AF043700-6|AAB97569.2|  443|Caenorhabditis elegans Hypothetical ...    29   3.1  
U41552-9|AAC69098.2| 1061|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ...    27   9.5  

>U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 6 protein.
          Length = 217

 Score = 65.7 bits (153), Expect = 2e-11
 Identities = 36/58 (62%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
 Frame = +2

Query: 344 IRPNLKIGTVCILLAGRHAGKRVVLVGILP-SGLLLVTGPFAFNSCPLRRIPQRYVSA 514
           +R  L  GTV I+LAGRH GKRVV +  LP SGLLLVTGP   N  PLRRI Q +V A
Sbjct: 67  LRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVIA 124



 Score = 30.7 bits (66), Expect = 0.78
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 478 PATPYSSALCVGTSTRISLGNFKLPKHFNDDY 573
           P      A  + TS ++++   K+P+H ND+Y
Sbjct: 113 PLRRIGQAFVIATSLKVNVSGVKIPEHINDEY 144


>Z83102-9|CAI79156.1|   82|Caenorhabditis elegans Hypothetical
           protein C54C8.12 protein.
          Length = 82

 Score = 31.1 bits (67), Expect = 0.59
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +2

Query: 275 FYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKR 409
           FYPT+   +A S G P +       PN ++  V    A RHAG R
Sbjct: 26  FYPTEISTKARSHGHPVNTLGESEDPNFQVDNVPGERARRHAGPR 70


>Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical protein
            C02B4.1 protein.
          Length = 1461

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +1

Query: 244  PEQYPQT*EVLLPHSGENPCFIW--WPSIQQACTQDPTQPEDRNCL 375
            PEQ+ QT E  L    E   FIW  W S  ++C QD  Q   + CL
Sbjct: 1068 PEQHIQTEECNLNSCLE--LFIWSDWSSCSKSCGQDGIQTRQKLCL 1111


>Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical protein
            C02B4.1 protein.
          Length = 1461

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +1

Query: 244  PEQYPQT*EVLLPHSGENPCFIW--WPSIQQACTQDPTQPEDRNCL 375
            PEQ+ QT E  L    E   FIW  W S  ++C QD  Q   + CL
Sbjct: 1068 PEQHIQTEECNLNSCLE--LFIWSDWSSCSKSCGQDGIQTRQKLCL 1111


>AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein.
          Length = 1461

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +1

Query: 244  PEQYPQT*EVLLPHSGENPCFIW--WPSIQQACTQDPTQPEDRNCL 375
            PEQ+ QT E  L    E   FIW  W S  ++C QD  Q   + CL
Sbjct: 1068 PEQHIQTEECNLNSCLE--LFIWSDWSSCSKSCGQDGIQTRQKLCL 1111


>AF043700-6|AAB97569.2|  443|Caenorhabditis elegans Hypothetical
           protein K09H9.2 protein.
          Length = 443

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = -3

Query: 438 PLGRIPTSTT--LLPACLPARRMQTVPIFRLGRILRTCLLNGRPPDEARIFS*VG*KDFL 265
           P+  I ++TT  LL  CL A    T+P F++  I   C   G    +  + S    KD L
Sbjct: 132 PMKIIESATTVLLLHKCLEAPDSPTLPNFQVKTIGGKCFSTGELCPQVDVLSIGRLKDML 191

Query: 264 RLRVLFW 244
           R + L W
Sbjct: 192 REQELRW 198


>U41552-9|AAC69098.2| 1061|Caenorhabditis elegans Hypothetical
           protein K07E3.1 protein.
          Length = 1061

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -3

Query: 495 GIRRSGHELKAKGPVTKSRPLGRIPTSTTL 406
           G+  SG+ + +  P+T+    G +PTS+T+
Sbjct: 130 GVELSGNPIMSMAPITELATNGGLPTSSTI 159


>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
            protein Y40C5A.3 protein.
          Length = 2344

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = +3

Query: 201  TVVVKQIGGEKNGGTRTVPSNVGSPSTPLRRKSVLHLVAVHSA 329
            T V + I  E N  T  +P+ +G+P +PL+ K+ L L +  SA
Sbjct: 1379 TTVTEHIDAETNSAT--IPT-IGTPPSPLKPKTKLGLTSHPSA 1418


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,368,553
Number of Sequences: 27780
Number of extensions: 276924
Number of successful extensions: 750
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)