Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00771
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    28   1.1  
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||...    27   2.6  
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    26   6.0  
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    26   6.0  
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    25   8.0  
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch...    25   8.0  
SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    25   8.0  

>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -2

Query: 687 SPRDKFTSLSIQYVFSVFGCPPGVSTDTDLTCTPWFSSS 571
           SP+  F++L +  + ++F C  G+    + T  PW  +S
Sbjct: 169 SPKPLFSALQVYPLATIFNCVAGLPQGFESTVFPWNKTS 207


>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 380

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 515 DDVFQKHKESAYVRPYTRSELENQGVQVRSVSVETPG 625
           + V  KH E       T++ELE +   +R   ++TPG
Sbjct: 60  EKVRAKHAEKTVEIEITKAELEEKNFHLRLTVIDTPG 96


>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1010

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = -1

Query: 601 PHLHALVLE-LRSGIRTHVGRFLVLLENV 518
           P+L A + E L  G++THVGR  +LL+ V
Sbjct: 630 PYLRAKLAEILYFGVQTHVGRSELLLDVV 658


>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 473 NDARSILLPLARYIDDVFQKHKESAYVRPYTRSELENQGV 592
           N   S L  L + +D+V ++H+    + P   S LE  G+
Sbjct: 464 NSEWSKLRKLHKMVDEVLERHRHRYEINPAFVSRLEQGGI 503


>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1190

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 145 RSQTVKLREVSLRNWLPPVAEFFNS 71
           R    K+ E+  RNW PPV E+  S
Sbjct: 441 RDARKKIIEIHTRNWDPPVPEWLCS 465


>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
           Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
 Frame = +3

Query: 270 TGTVRLPNGQTRPLDI-DTLGNMLESSALSPNRELYGSIHNNGHSFTAY 413
           T    L N      D+ + L   L   ALS  R+ YG    NGH+ + Y
Sbjct: 164 TYVTNLDNATCSKCDLAENLWMCLTCGALSCGRKQYGGGGGNGHALSHY 212


>SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 594

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +1

Query: 133 QFDFVTWMAPTSVRYAMAGPESCRRSLFVTID 228
           Q+  + W  P+++ YA+A PE  RR++ +  D
Sbjct: 417 QWGHIGWSVPSAMGYAVAAPE--RRTIVMVGD 446


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,090,953
Number of Sequences: 5004
Number of extensions: 68001
Number of successful extensions: 223
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)