Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00770
(649 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb... 30 0.33
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 0.76
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 1.0
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces... 27 1.8
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ... 26 4.1
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 26 4.1
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 26 4.1
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein... 26 5.4
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 5.4
SPAC57A10.12c |ura3||dihydroorotate dehydrogenase Ura3|Schizosac... 25 7.1
SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces ... 25 9.4
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar... 25 9.4
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 25 9.4
>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 519
Score = 29.9 bits (64), Expect = 0.33
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +2
Query: 239 MLTGVILQRHPEPFSENTTSF*LTNYRPLRTSLKKTWSVVYKVLCKASMVY 391
ML+ +IL P + + ++NYRPL LK W V +L +VY
Sbjct: 313 MLSLIILINFPLGLALGVYTGRISNYRPLDIWLKGYWGRVVSILLNTILVY 363
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 28.7 bits (61), Expect = 0.76
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = -2
Query: 216 FKESAGFSDTIGGKARLSSSPSTRAPAPERPDISSKNFIVSIALSMLKSSSA 61
F + DT + SS P++ + A +SS + I S + SML SSSA
Sbjct: 3 FTNNTSSVDTSLSSSASSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSSSA 54
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 28.3 bits (60), Expect = 1.0
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = -2
Query: 195 SDTIGGKARLSSSPSTRAPAPERPDISSKNFIVSIALSMLKSSSAIISFSTGT 37
S TI + SSSP++ + SS +F +++ S + SSS+ S T +
Sbjct: 287 SSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSS 339
Score = 27.1 bits (57), Expect = 2.3
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = -2
Query: 213 KESAGFSDTIGGKARLSSSPST-RAPAPERPDISSKNFIVSIALSMLKSSSAIISFS 46
K S+ FS T+ + SSS T + + RP SS + S +LS KSSS+ S S
Sbjct: 363 KSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSH---SSSLSSHKSSSSSKSSS 416
>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 591
Score = 27.5 bits (58), Expect = 1.8
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 116 EISGRSGAGARVEGEDDKRALPPIVSEKPADSLKKKTKRPP 238
+I+ +G GA E ++ K P S ADS K +T PP
Sbjct: 195 DINMNAGEGA-AEEQEKKEEFAPSSSTPSADSAKPETTNPP 234
>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 664
Score = 26.2 bits (55), Expect = 4.1
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +3
Query: 384 WSTAYNGSGRIYTSYIIDGLLWI 452
+ T Y S R +T +++ GL+WI
Sbjct: 573 YGTGYIFSKRFFTGWVVVGLIWI 595
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +2
Query: 143 ARVEGEDDKRALPP-IVSEKPADSLKKKT 226
A +GED++ LPP +V K SL K T
Sbjct: 992 AETKGEDEEALLPPEVVQRKVKGSLNKMT 1020
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -2
Query: 192 DTIGGKARLSSSPSTRAPAPERPDISSKNFIVSIALS 82
DT+G R SS+ + +PA P + IVS +S
Sbjct: 306 DTLGSSTRPSSADTAGSPATSPPATADSKTIVSKTIS 342
>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 715
Score = 25.8 bits (54), Expect = 5.4
Identities = 25/100 (25%), Positives = 36/100 (36%), Gaps = 2/100 (2%)
Frame = +2
Query: 77 SMDNAMDTMKFLDEISGRSGAGARVEGEDDKRALPPIVSEKPADSLKKKTKRPPMLTGV- 253
++ NA++T + S V K PP + K D K K+ P+L
Sbjct: 594 NVPNAIETDSSPSDTISSSPTVRAVNLSPSKNQKPPKILTKIPDIFSKAGKKSPILPTFQ 653
Query: 254 -ILQRHPEPFSENTTSF*LTNYRPLRTSLKKTWSVVYKVL 370
EPFS N T N L ++ K K+L
Sbjct: 654 ESCSLPIEPFSSNITDLPFVNTVTLASTSSKIKRAKLKML 693
>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 230
Score = 25.8 bits (54), Expect = 5.4
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 162 SSPSTRAPAPERPDISSKNFIVSIALSMLKSSSAIISFST 43
S PST + +P SS + I S + +S+ IIS ST
Sbjct: 69 SQPSTSSSSPSSTSTSSSSGTSVITASDVSASNEIISSST 108
>SPAC57A10.12c |ura3||dihydroorotate dehydrogenase
Ura3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 443
Score = 25.4 bits (53), Expect = 7.1
Identities = 16/31 (51%), Positives = 20/31 (64%)
Frame = +3
Query: 555 GAQGVPLIYIALNTLGTLVKGHIFYLDLPLL 647
G G PL IALNTL TL K H+ D+P++
Sbjct: 355 GLSGPPLKPIALNTLRTLRK-HL-SSDIPII 383
>SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 388
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 260 QRHPEPFS-ENTTSF*LTNYRPLRTSLKKTW 349
Q+ PEP + + SF +Y PL+ ++KTW
Sbjct: 29 QKQPEPETVDEKVSF--ESYSPLKLMIQKTW 57
>SPAC23A1.04c |mnl1||alpha mannosidase-like
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 787
Score = 25.0 bits (52), Expect = 9.4
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +3
Query: 465 NFKRIDGLSQIVEATVMLCSTFLRTRVFASGAQ---GVPLIYIALNTLGT 605
NF+R D Q+ EAT+ + L + +FAS + +PL L TL T
Sbjct: 119 NFER-DTKVQVFEATIRILGGLLSSHIFASEEKYGFQIPLYKGELLTLAT 167
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 158 EDDKRALPPIVSEKPADSLKKKTKRP 235
E+D ALPP S++ + L KK RP
Sbjct: 670 EEDFPALPPSTSKRISVQLGKKQARP 695
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,709,331
Number of Sequences: 5004
Number of extensions: 55691
Number of successful extensions: 158
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -