Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00770
         (649 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0467 - 21066354-21066501,21066831-21066893,21067223-210672...    32   0.34 
01_06_1435 + 37351653-37351990,37352241-37352424                       31   1.0  
10_02_0071 + 4928899-4929465                                           30   1.4  
08_02_0912 - 22536181-22537011                                         30   1.4  
03_06_0412 + 33749039-33749077,33749585-33749728,33750110-337508...    29   3.2  
12_02_0953 - 24736642-24736673,24737104-24737188,24737267-247373...    28   5.6  
01_06_0642 + 30811708-30811768,30812256-30812305,30812455-308129...    28   7.4  
01_02_0070 - 10817675-10818024,10818228-10818893,10819094-108191...    28   7.4  
10_02_0201 - 6764313-6765263                                           27   9.7  
01_01_0938 + 7400843-7401522,7402192-7403065                           27   9.7  

>06_03_0467 -
           21066354-21066501,21066831-21066893,21067223-21067291,
           21067666-21067742,21069451-21069558,21070008-21070274,
           21071964-21072607,21073370-21073550,21073688-21073834
          Length = 567

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 16/50 (32%), Positives = 21/50 (42%)
 Frame = +2

Query: 128 RSGAGARVEGEDDKRALPPIVSEKPADSLKKKTKRPPMLTGVILQRHPEP 277
           R G G    G+    A    V   PAD + +    PP   G ++ R PEP
Sbjct: 357 RGGGGHHYVGQQQSVAATFHVVSSPADPIARLMSPPPAHQGTVMLRQPEP 406


>01_06_1435 + 37351653-37351990,37352241-37352424
          Length = 173

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +2

Query: 50  KLIMADEDLSMDNAMDTMKFLDEISG--RSGAGARVEGEDDKRALP 181
           ++++AD DL M  A+D     D+  G  R G G +  GE+ +R +P
Sbjct: 61  QVLVADIDLIMRGAVDAPGSWDDNDGNDRRGGGGKPRGEERRRGVP 106


>10_02_0071 + 4928899-4929465
          Length = 188

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 22/52 (42%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
 Frame = -2

Query: 204 AGFSDTIGGKARLSSSPSTRAPAPE----RPDISSKNFIVSIALSMLKSSSA 61
           A    T GGKA  SSSP    P P     R D S +N  V   +  LK SSA
Sbjct: 50  ASVKRTGGGKASSSSSPRAAPPPPVMTSCRRDDSIRNEAVEDCIEFLKRSSA 101


>08_02_0912 - 22536181-22537011
          Length = 276

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 125 GRSGAGARVEGEDDKRALPPIVSEKPADSLKKKTKRPP 238
           G +G  A  E  + +   PP+V++ P  S K+K   PP
Sbjct: 110 GENGKAAAAENVEVQTPPPPLVADAPRHSKKRKAPPPP 147


>03_06_0412 +
           33749039-33749077,33749585-33749728,33750110-33750862,
           33750959-33751778,33751893-33752140,33752285-33752391,
           33753098-33753248,33753339-33753530,33753905-33754042
          Length = 863

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 574 SGTPCAPLANTLVRRKVEQSITVASTI*DRP 482
           +G  C P++N L+RR+   S+   STI  RP
Sbjct: 449 AGPSCTPVSNILLRRRKYSSLRPFSTIAPRP 479


>12_02_0953 -
           24736642-24736673,24737104-24737188,24737267-24737386,
           24737484-24737549,24737629-24737799,24737901-24737999,
           24738075-24738186,24738282-24738343,24738412-24738483,
           24738583-24738681,24738764-24738997,24739104-24739178,
           24739299-24739386,24739478-24739638,24739734-24739841,
           24739934-24741922,24742007-24742279,24742957-24743295,
           24743449-24745038,24745166-24745241,24745333-24745412,
           24745614-24745679,24745761-24745830,24745899-24746134,
           24746149-24746319,24746915-24747097,24747176-24747241,
           24747326-24747389,24747472-24747530,24747612-24747699,
           24747799-24747891,24747956-24748116,24748215-24748307,
           24748405-24748518,24748654-24748773,24748852-24748935,
           24749016-24749171,24749518-24750154,24752874-24752929
          Length = 2815

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = +2

Query: 125 GRSGAGARVEGEDDKRALPPIVS-EKPADSLKKKTKRPPMLTG 250
           G+S A A  EG        P  S  KPA S+     RPPM +G
Sbjct: 139 GKSSAAAASEGGGGSTQSTPTKSVTKPAYSIGMSASRPPMSSG 181


>01_06_0642 +
           30811708-30811768,30812256-30812305,30812455-30812926,
           30813237-30813596,30813694-30814101,30814383-30814453,
           30814553-30814629,30814741-30814888,30815878-30816039,
           30816119-30816304
          Length = 664

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +2

Query: 512 DALFNFPAYQSVRQWSAGGPAYLYS 586
           DA F  P Y  VR +SAG   Y YS
Sbjct: 315 DAFFISPGYHPVRLFSAGSHGYPYS 339


>01_02_0070 -
           10817675-10818024,10818228-10818893,10819094-10819124,
           10820038-10820164,10820279-10820736
          Length = 543

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/42 (30%), Positives = 17/42 (40%)
 Frame = +2

Query: 125 GRSGAGARVEGEDDKRALPPIVSEKPADSLKKKTKRPPMLTG 250
           G  G GA   G      LPP+ S   A  +    +R P+  G
Sbjct: 104 GCGGGGAAASGASSLLPLPPVRSSCSASHISPNPRRSPLFPG 145


>10_02_0201 - 6764313-6765263
          Length = 316

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 288 FSENGSGCLCRMTPVNIGGLFVFF 217
           FS   + CLCRM P+ +GG  V +
Sbjct: 186 FSGECATCLCRMDPLVVGGRTVLY 209


>01_01_0938 + 7400843-7401522,7402192-7403065
          Length = 517

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 17/55 (30%), Positives = 31/55 (56%)
 Frame = -2

Query: 189 TIGGKARLSSSPSTRAPAPERPDISSKNFIVSIALSMLKSSSAIISFSTGTCRRH 25
           T    A+ S+S +TR+ A      ++K+  +S+  S +  S+++ SFS G  +RH
Sbjct: 46  TTPNPAQNSASSATRSEAAT-VTTTTKSPAISVDRSSIARSNSLDSFSYGQAKRH 99


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,615,704
Number of Sequences: 37544
Number of extensions: 367159
Number of successful extensions: 990
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)