Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00770
         (649 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical pr...    28   6.6  
AC024817-58|AAF59562.4|  536|Caenorhabditis elegans Hypothetical...    28   6.6  
Z81500-5|CAB04102.1|  244|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AF016437-3|AAB65885.2|  405|Caenorhabditis elegans Hypothetical ...    27   8.7  

>U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical
           protein H03E18.1 protein.
          Length = 1147

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 149 VEGEDDKRALPPIVSEKPADSLKKKTKRPP 238
           VEGE  +   P   ++KP  +    TKRPP
Sbjct: 367 VEGEKKETKKPKSTTKKPTKTAAASTKRPP 396


>U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical
           protein F35A5.1 protein.
          Length = 1274

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +2

Query: 167 KRALPPI-VSEKPADSLKKKTKRPPMLTGVILQRHPEPFSENTTS 298
           K+  PP  V ++PA+ +KK +  P   T V+ ++ PEP S   +S
Sbjct: 347 KKYKPPWEVDDEPAEEVKKPSA-PEKKTPVLKRKEPEPSSTTPSS 390


>AC024817-58|AAF59562.4|  536|Caenorhabditis elegans Hypothetical
           protein Y54G2A.29 protein.
          Length = 536

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +2

Query: 50  KLIMADEDLSMDNAMDTMKFLDEISGRSGAGARVEGEDDKRAL 178
           +L   D+D+SM    DT+  +      S     + GEDDK+ +
Sbjct: 71  QLFTMDKDISMSEEFDTISDMSNSLEESEKFKLIAGEDDKKRM 113


>Z81500-5|CAB04102.1|  244|Caenorhabditis elegans Hypothetical
           protein F11D11.7 protein.
          Length = 244

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
 Frame = +2

Query: 23  KCLRQVPVEKLIMADEDLSMDNAMDTMKFLDE---ISGRSGAGARVEGEDDKRALPPIVS 193
           KC+ +  V   I   E+      +   K+ ++   I GR+ +G R+E  DDK   P +VS
Sbjct: 163 KCIERGAVLARIETPEECKWKQDIVANKYFEKGIWIDGRAASGTRIESCDDK--FPELVS 220


>AF016437-3|AAB65885.2|  405|Caenorhabditis elegans Hypothetical
           protein F13H6.4 protein.
          Length = 405

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +2

Query: 509 GDALFNFPAYQSVRQWSA-GGPAYLYSFEY 595
           GD  FN   +QS +  +  G   +LYSFEY
Sbjct: 248 GDLGFNLGVFQSAKSSAKYGNDVFLYSFEY 277


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,843,163
Number of Sequences: 27780
Number of extensions: 307930
Number of successful extensions: 756
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)