Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00770
         (649 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    26   0.27 
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    24   1.1  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    24   1.1  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    24   1.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.9  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   7.8  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 26.2 bits (55), Expect = 0.27
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
 Frame = +2

Query: 122 SGRSGAGARVEGEDDKRALPPIVS-EKPADSLKKKTKRPPMLTGVILQRHPEPFSENTTS 298
           SG SG+G+               S E  +++   ++ +PP LT  +L RH    +E+   
Sbjct: 598 SGASGSGSAENLSSGSNNQTSSASRENTSNTTSMESFKPPTLTESLLNRH----NEDMEK 653

Query: 299 F*LTNYRPLRTSLK 340
             +  +R  R+S+K
Sbjct: 654 LMMLKHREFRSSIK 667


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 14/57 (24%), Positives = 26/57 (45%)
 Frame = +3

Query: 420 TSYIIDGLLWIGLQYNFKRIDGLSQIVEATVMLCSTFLRTRVFASGAQGVPLIYIAL 590
           T ++ID  + +  +    + D   Q++    ++   +LRT  F      +PL YI L
Sbjct: 130 TIFLID--IVVNFRTGIMQQDNAEQVILDPKLIAKHYLRTWFFLDLISSIPLDYIFL 184


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 14/57 (24%), Positives = 26/57 (45%)
 Frame = +3

Query: 420 TSYIIDGLLWIGLQYNFKRIDGLSQIVEATVMLCSTFLRTRVFASGAQGVPLIYIAL 590
           T ++ID  + +  +    + D   Q++    ++   +LRT  F      +PL YI L
Sbjct: 130 TIFLID--IVVNFRTGIMQQDNAEQVILDPKLIAKHYLRTWFFLDLISSIPLDYIFL 184


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 14/57 (24%), Positives = 26/57 (45%)
 Frame = +3

Query: 420 TSYIIDGLLWIGLQYNFKRIDGLSQIVEATVMLCSTFLRTRVFASGAQGVPLIYIAL 590
           T ++ID  + +  +    + D   Q++    ++   +LRT  F      +PL YI L
Sbjct: 130 TIFLID--IVVNFRTGIMQQDNAEQVILDPKLIAKHYLRTWFFLDLISSIPLDYIFL 184


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 207  SAGFSDTIGGKARLSSSPSTRAPAPERPDIS 115
            +AGF+      A L+ +  T APA E PD++
Sbjct: 1539 NAGFAVAEYEFATLTVTGGTIAPARELPDVN 1569


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 534 RTRVFASGAQGVPLIYIA 587
           R+   AS A G PL Y+A
Sbjct: 132 RSSALASKATGYPLAYVA 149


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,740
Number of Sequences: 438
Number of extensions: 3762
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)