Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00720
(763 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces po... 29 0.55
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 29 0.72
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 27 2.2
SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subuni... 27 2.2
SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 27 3.9
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc... 27 3.9
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch... 26 5.1
SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha... 26 6.7
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 26 6.7
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy... 26 6.7
SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 6.7
SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor 2|Schizosac... 25 8.9
SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|... 25 8.9
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||... 25 8.9
>SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 586
Score = 29.5 bits (63), Expect = 0.55
Identities = 14/50 (28%), Positives = 28/50 (56%)
Frame = +1
Query: 193 TLGNMLESSALSPNRELYGSITTTGTVSPRTCTTRNTDTLNNLVLSLMRP 342
TLG M + +LS + +L ++ G + TC + D ++N V++++ P
Sbjct: 278 TLGAMFNALSLSESGKLLTALEKVGQANDHTCLA-SIDFMHNFVIAVIEP 326
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 29.1 bits (62), Expect = 0.72
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Frame = +1
Query: 196 LGNMLESSALSPNRELYGSITTTGTVSPRTCTTRNTDTLNNLVL-SLMRPQRCAIHSSTA 372
L ++ ++A S + +G+ T T + S T NT++ N V S+ P + +ST
Sbjct: 555 LTSVNSTTATSASSTPFGNSTITSSASGSTGEFTNTNSGNGDVSGSVTTPTSTPLSNSTV 614
Query: 373 GTPTSMTFS--RSTRNLPTCVLIPDLSSRTRA 462
++ T S +T LPT LS+ T A
Sbjct: 615 APTSTFTSSGFNTTSGLPTSSASTPLSNSTVA 646
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 27.5 bits (58), Expect = 2.2
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +3
Query: 375 HAYIDDVFQKHKESAYVRPYTRSELENQGVQVRSVSVETPG 497
H + V KH E T++ELE + +R ++TPG
Sbjct: 56 HMGPEKVRAKHAEKTVEIEITKAELEEKNFHLRLTVIDTPG 96
>SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subunit
Cwg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 355
Score = 27.5 bits (58), Expect = 2.2
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +2
Query: 479 VRGDARRTTETLNTYWMLSDVNLSRGLDFSDNGPVYARFTHLNYRH 616
+ G + +T YW+LS + L L F D G + ++ L+ +H
Sbjct: 251 LNGRTNKDVDTCYAYWVLSSLKLLDALPFIDGGEL-EKYLLLHAQH 295
>SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 320
Score = 26.6 bits (56), Expect = 3.9
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -3
Query: 509 FRLSAGRLHGHGPHLHALVLEL 444
FR ++G + H PH H +L+L
Sbjct: 183 FRFASGIIKAHAPHFHQALLKL 204
>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
Fep1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 564
Score = 26.6 bits (56), Expect = 3.9
Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 4/108 (3%)
Frame = +1
Query: 112 WRRNVEEAI---ATGTVRLPNGQTRPLDIDTLGNMLES-SALSPNRELYGSITTTGTVSP 279
WRR + ++ A G + RP+ + L ++ + N G GT
Sbjct: 23 WRRGPDNSLLCNACGLYQKHRKHARPVKSEDLKDISPLIQQVCKNGTCAGDGFCNGTGGS 82
Query: 280 RTCTTRNTDTLNNLVLSLMRPQRCAIHSSTAGTPTSMTFSRSTRNLPT 423
+CT LNN + SL + + S + P+S+ S T+ PT
Sbjct: 83 ASCT--GCPALNNRIRSLNASKSQSGRKSLSPNPSSVPSSTETKASPT 128
>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 891
Score = 26.2 bits (55), Expect = 5.1
Identities = 20/61 (32%), Positives = 27/61 (44%)
Frame = -2
Query: 717 IQGTLRSSNFGVMKIRTVVRRLLPVLFTFIL*LKCL*LR*VKRAYTGPLSEKSSPRDKFT 538
++ LR K T + L LF+ I CL + VKR +G S SSP K +
Sbjct: 216 LESPLRKQGSHNWKTSTNSQSRLAALFSSIFEDSCLEVDSVKRLLSGSPSSSSSPLKKDS 275
Query: 537 S 535
S
Sbjct: 276 S 276
>SPCC1020.08 |||wybutosine biosynthesis protein
Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 688
Score = 25.8 bits (54), Expect = 6.7
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Frame = +1
Query: 94 IDEMERWRRNVEEAIATGTVRLPNGQTRPL-----DIDTLGNML 210
ID + +W R+V E + GT+ L G T L D++ +G+M+
Sbjct: 236 IDALLQWTRSVAECLKNGTL-LKIGNTDSLSSDVMDVEDMGSMM 278
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.8 bits (54), Expect = 6.7
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 338 LISDNTKLFKVSVFRVVHVRGETVPVVVIEPYSSLFGERAL 216
L++D+TK S F +V ++V E S+LFG+ L
Sbjct: 1168 LMTDSTKCSIASFFNIVSANILKSKLIVCEADSTLFGDPVL 1208
>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1010
Score = 25.8 bits (54), Expect = 6.7
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = -3
Query: 473 PHLHALVLE-LRSGIRTHVGRFLVLLENV 390
P+L A + E L G++THVGR +LL+ V
Sbjct: 630 PYLRAKLAEILYFGVQTHVGRSELLLDVV 658
>SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 285
Score = 25.8 bits (54), Expect = 6.7
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Frame = -1
Query: 760 ESVHFNTHLALVREYPGDIALVELRSDED-----THCGATAATGVVHVYSVAEMPVVEVS 596
E VH+NT+ +V E + + EL D D + T T H ++ +P +
Sbjct: 213 EPVHYNTYDGVVNEPNSSVIIEELDDDYDELNDPMNNNDTPITNSTHSAQMSNLPTHDSM 272
Query: 595 EASVHGPV 572
+ + G V
Sbjct: 273 DIDMGGAV 280
>SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor
2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 446
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +3
Query: 282 YMHDPEHRYLEQFGVIADEATTMRDPFFYRWHAYIDDVFQ 401
Y D EHR+L + G E + D ++ YI ++Q
Sbjct: 171 YTIDEEHRFLRELGRFEIEKLKIEDMEVEEFNYYITTLYQ 210
>SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|chr
3|||Manual
Length = 700
Score = 25.4 bits (53), Expect = 8.9
Identities = 7/29 (24%), Positives = 19/29 (65%)
Frame = -3
Query: 392 VIDVGVPAVEEWIAHRCGLISDNTKLFKV 306
++D+G+P + + + H C +++ N K+ +
Sbjct: 83 LLDIGMPVMHKAMRHNCRILALNGKILLI 111
>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 600
Score = 25.4 bits (53), Expect = 8.9
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = +3
Query: 375 HAYIDDVFQKHKESAYVRPYTRSELENQGV 464
H +D+V ++H+ + P S LE G+
Sbjct: 474 HKMVDEVLERHRHRYEINPAFVSRLEQGGI 503
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,356,675
Number of Sequences: 5004
Number of extensions: 71937
Number of successful extensions: 258
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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