Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00720
         (763 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0674 - 21745321-21746223,21746229-21747608                       30   2.3  
11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903     28   7.1  
11_06_0643 - 25773250-25773843                                         28   9.3  
03_02_0849 - 11768191-11771412                                         28   9.3  

>12_02_0674 - 21745321-21746223,21746229-21747608
          Length = 760

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 18/67 (26%), Positives = 28/67 (41%)
 Frame = +1

Query: 256 TTTGTVSPRTCTTRNTDTLNNLVLSLMRPQRCAIHSSTAGTPTSMTFSRSTRNLPTCVLI 435
           T TG +   TCT+  +        +          S T+ TP++   S ST  +PT    
Sbjct: 567 TATGKIPSTTCTSPLSTATGKTSSTPSTSPLSTSTSKTSSTPSTSPLSSSTIKIPTTART 626

Query: 436 PDLSSRT 456
            +LS+ T
Sbjct: 627 GELSTPT 633


>11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903
          Length = 1135

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = +2

Query: 452 EPGRASEVRVRGDARRTTETLNTYWMLSDVNLSRGLDFSDNGPVY-ARFTHLNYRHFSYR 628
           E  R   + V GD   T   +    ++  ++L    DF+D+   +  +  HL Y  F Y 
Sbjct: 545 EFSRVRSLTVFGDTSDTVSYVRKCKLIRVLDLQECNDFADDHLKHICKLWHLKYLSFGYN 604

Query: 629 INV 637
           INV
Sbjct: 605 INV 607


>11_06_0643 - 25773250-25773843
          Length = 197

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = -2

Query: 486 PRTRTSLARPGSRAQIWYKDARRQIPCASGKRHRCRRASGR 364
           P   TS A P  RA +W+  +   +   S     CRR  GR
Sbjct: 126 PCLPTSPAIPSPRASVWWSSSSTDVFLNSVSARCCRRYGGR 166


>03_02_0849 - 11768191-11771412
          Length = 1073

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +3

Query: 219 RPLAEQRTVWFDHNNGHSFTAYMHDPEHRYLEQFGV 326
           RP ++ R++W D   G +F  +M +    YLE   +
Sbjct: 757 RPHSKLRSLWVDWYPGENFPGWMGESSFTYLENLRI 792


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,323,423
Number of Sequences: 37544
Number of extensions: 521373
Number of successful extensions: 1744
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1744
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)