Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00719X
         (336 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar...    28   0.33 
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    27   0.77 
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    26   1.8  
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|...    26   1.8  
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc...    25   3.1  
SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces pombe...    25   3.1  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    24   7.1  
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    24   7.1  
SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component Sec9|Sc...    23   9.4  
SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe...    23   9.4  

>SPAC1093.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 28.3 bits (60), Expect = 0.33
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +3

Query: 63  QRPPNLGRRKRLHKLPISWRLISLWENNNVIFKILNTEHEMY 188
           +RP +   RKRLH++P+S   +   +     FKI NT+  +Y
Sbjct: 708 ERPVHKFIRKRLHQIPVS-NKVQPRDQKQPDFKIPNTDINVY 748


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 27.1 bits (57), Expect = 0.77
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 61   YNDRLTWGDGKDYTSYRLAGDSSLFGKTTTSSS 159
            Y  +LT+G   +Y   ++  DS+ F K   SSS
Sbjct: 921  YKFKLTYGAFSEYLDVKILADSTFFFKAMDSSS 953


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
           Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
 Frame = +2

Query: 137 GKQQRHLQDTEHRTRDVLETGRERGQLRR-----QEDLGIERFQ*KRHTWYLYPVKVGDQ 301
           GK Q HL+  E   RD+ E   E   LR      + D   E+    R ++    VK+ +Q
Sbjct: 384 GKLQAHLEKFEQTERDISEKNEEVKSLREKAAKVKNDCTSEKK--TRQSYEQQTVKIEEQ 441

Query: 302 QLFLIENRE 328
             FL+ N+E
Sbjct: 442 LKFLL-NKE 449


>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 714

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +1

Query: 253 VEETHLVFIPGESGRPTAVPHRE 321
           + +TH+  +PG++G PT +P R+
Sbjct: 265 LSDTHI--LPGDNGTPTVLPERK 285


>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
           Bms1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1121

 Score = 25.0 bits (52), Expect = 3.1
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +2

Query: 209 GQLRRQEDLGIERFQ*KRHTWYLYPVKVGDQQLFLIENREYR 334
           G L  ++  G+ + + KRH W+   +K  D  +F +  R ++
Sbjct: 751 GLLPNEQRYGLVQVRIKRHRWHKKILKTNDPLIFSMGWRRFQ 792


>SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 325

 Score = 25.0 bits (52), Expect = 3.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 144 NNVIFKILNTEHEMYLKLDVNVDSYGD 224
           N V+   L   HE+  K+DV +D+ GD
Sbjct: 188 NTVVDPELKRVHELVEKVDVVIDTVGD 214


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = -3

Query: 163 ILKMTLLFSQREMSRQLIGSLCSLFRLPRL 74
           ++ ++ L ++ ++S  ++  LCSL RLP L
Sbjct: 831 LVTLSRLITKPDLSVHILEFLCSLARLPDL 860


>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 471

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +3

Query: 102 KLPISWRLISLWEN 143
           KLP+ W+LI++ EN
Sbjct: 53  KLPLKWKLITVKEN 66


>SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component
           Sec9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 204 NVDSYGDRKTWGSNDSS 254
           N  SYG   T+GSN SS
Sbjct: 72  NYGSYGASNTYGSNGSS 88


>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 520

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 259 ETHLVFIPGESGRPTAVPHREPGVPA 336
           E+H ++I GE+  P++V     G P+
Sbjct: 137 ESHQIYIQGETKSPSSVSQSLSGDPS 162


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.136    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,258,859
Number of Sequences: 5004
Number of extensions: 21233
Number of successful extensions: 52
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)