Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00719X
         (336 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0686 + 10407800-10409501,10409611-10410284                       27   3.8  
01_01_0885 + 6966700-6966979,6967930-6968110,6968224-6968365,696...    27   5.0  
12_01_0926 + 9178804-9180324,9180612-9181157                           26   6.6  
11_03_0158 + 10911997-10912078,10912203-10912288,10913780-109138...    26   6.6  
08_01_0051 - 355392-355450,355507-355634,356271-356425,356883-35...    26   8.7  
05_06_0277 + 26885621-26886064,26886148-26886317,26887038-268879...    26   8.7  

>03_02_0686 + 10407800-10409501,10409611-10410284
          Length = 791

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 69  PPNLGRRKRLHKLPISWRLIS 131
           PP +G  + LH+L +S+ LIS
Sbjct: 198 PPTIGNLRMLHELSLSYNLIS 218


>01_01_0885 +
           6966700-6966979,6967930-6968110,6968224-6968365,
           6968448-6968517,6968617-6968783
          Length = 279

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 150 VIFKILNTEHEMYLKLDVNVDSYGDRKTW 236
           ++F +L+T   +Y K +  +DSYG+ K W
Sbjct: 224 IVFVVLHTVPILYEKYEDQIDSYGE-KGW 251


>12_01_0926 + 9178804-9180324,9180612-9181157
          Length = 688

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = -3

Query: 163 ILKMTLLFSQREMSRQLIGSLCSLFRLPRLGGRCTGQR 50
           +L    L  Q E+ RQL+GS   L        RCTG R
Sbjct: 170 LLSQAWLREQHELIRQLVGSSTDLMDKLLQTLRCTGTR 207


>11_03_0158 +
           10911997-10912078,10912203-10912288,10913780-10913857,
           10913967-10914098,10914385-10914435,10914529-10914669,
           10914754-10914876,10914989-10915066,10915448-10915541,
           10915633-10915739,10915936-10916019,10916649-10916744,
           10916835-10917023,10917705-10917780,10918507-10918610,
           10918708-10918967,10920000-10920086,10920184-10920411,
           10920752-10920826,10921264-10921346,10921552-10921661
          Length = 787

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +2

Query: 209 GQLRRQEDLGIERFQ*KRHTWYLYPVKVGDQQLFLIENREY 331
           G L+ +  + +  F  K+H  Y  P+K  D  +F +  R++
Sbjct: 580 GLLQHESKISVLHFSIKKHDSYEAPIKSKDSLIFNVGFRQF 620


>08_01_0051 -
           355392-355450,355507-355634,356271-356425,356883-357012,
           357600-357739,358384-358552,360286-360557
          Length = 350

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 108 PISWRLISLWENNNVIF 158
           P++W+LI +W   N+IF
Sbjct: 168 PLTWKLIKVWLPVNIIF 184


>05_06_0277 +
           26885621-26886064,26886148-26886317,26887038-26887941,
           26888544-26888575,26888862-26888928,26889116-26889173,
           26889329-26889421,26890366-26890480,26890847-26890894,
           26891012-26891057,26891161-26891231,26891865-26891870,
           26891991-26892038,26892439-26892488,26892892-26893154
          Length = 804

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 213 SYGDRKTWGSNDSSRRDTPG 272
           S   R+TW S D  RRD+ G
Sbjct: 410 SGASRETWSSRDDERRDSRG 429


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.314    0.136    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,353,618
Number of Sequences: 37544
Number of extensions: 145034
Number of successful extensions: 301
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 301
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)