Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00718X
         (423 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5D6.06c |||UDP-GlcNAc transferase associated protein Alg14|S...    45   6e-06
SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyce...    26   2.1  
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    26   2.8  
SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom...    26   2.8  
SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po...    26   2.8  
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|...    26   2.8  
SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces ...    25   3.7  
SPMIT.09 |atp8||F0-ATPase subunit 8; similar to S. cerevisiae Q0...    25   4.8  
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo...    25   4.8  
SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase |Schizo...    25   6.4  
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    25   6.4  
SPCC1442.10c |rpb3||DNA-directed RNA polymerase II subunit 3 |Sc...    24   8.5  

>SPAC5D6.06c |||UDP-GlcNAc transferase associated protein
           Alg14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 44.8 bits (101), Expect = 6e-06
 Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 2/116 (1%)
 Frame = +3

Query: 69  FTALVIGVIARVIYLLIKIFTTECALYQDSNLRTIFCIGSGGHTTELLRFMRNLNCREYY 248
           +    I V+A +I LL+     + +  +      +   GSGGHT E+L  +  L+ + Y 
Sbjct: 4   YVLTAIAVLASLIILLVGRNAIKSSKKKPFQKHLLVFFGSGGHTGEMLNLLNALDDKLYS 63

Query: 249 PRCTFL--PITISTVNQKFLKQGTNKVLICLNKIPRSRKVNQSYFSSVFSTIYSTL 410
            R        T+S      L      V   + K+PR+R V QS+ ++ F+  +S L
Sbjct: 64  VRSYVAGSDDTMSVSKASLLSNSLPSVKSKIFKVPRARYVKQSWLTTPFTAFWSLL 119


>SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 462

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 41  GNFIVSMFNIYCSSDRSNSQSYLF 112
           GN I  +FN+ C   R+ +Q Y+F
Sbjct: 118 GNVIFIVFNMACGLARTKAQMYIF 141


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = -1

Query: 315  LFPASKIFDSLLISLSARMYTVDSIPDNLNSS*NAVVQLYGHRSQCKIL 169
            LFP  K  ++  + LSA  Y  D +   L  S   +  LY H+   K++
Sbjct: 1130 LFPNDKEEEAKELMLSAMRYGCDFVDVELGWSSETINILYQHKGYTKLI 1178


>SPAPB1A11.01 ||SPAPB24D3.11|membrane
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 495

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +3

Query: 21  KRPFHIMEILSFLCLIFTALVIGVIARVIYLLIKIF 128
           +RP H++     + LI  +L++G +  ++YLL   F
Sbjct: 274 RRPLHLLCTQPIMILI--SLIVGTVYGILYLLFTAF 307


>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 17/72 (23%), Positives = 29/72 (40%)
 Frame = +3

Query: 93  IARVIYLLIKIFTTECALYQDSNLRTIFCIGSGGHTTELLRFMRNLNCREYYPRCTFLPI 272
           +AR+I+ L+   T        +      CIG      + +  + ++  +EY P C FL  
Sbjct: 284 LARLIFSLLYQITQHEQENMMNAQNLALCIGPSFSKADNIAELMSMKDKEYNPYCYFLEY 343

Query: 273 TISTVNQKFLKQ 308
            I   N  F  +
Sbjct: 344 AILHWNTLFANE 355


>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = +2

Query: 254 VYILADNDINSESKIFEAGNKQSTYLLK 337
           V+ LA ND+N +S+ + +GNK+ T L K
Sbjct: 559 VHALA-NDLNLKSRSYGSGNKRYTMLSK 585


>SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = +3

Query: 78  LVIG--VIARVIYLLIKIFTTECALYQDSNLRTIFCIGSGGHTTELLRFMRNLNCREY 245
           LVIG  VI R+I         E   Y +  L T++CI    + T+  ++  + N R++
Sbjct: 410 LVIGHRVITRIIIAYFLGCRREDIAYLNVPLHTVYCIEPQPYGTDFYQYNYDPNTRKF 467


>SPMIT.09 |atp8||F0-ATPase subunit 8; similar to S. cerevisiae
          Q0080|Schizosaccharomyces pombe|chr
          mitochondrial|||Manual
          Length = 48

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 27 PFHIMEILSFLCLIFTALV 83
          PF+ + ILSF  LIFT L+
Sbjct: 6  PFYFINILSFGFLIFTVLL 24


>SPAC3F10.16c |||GTP binding protein,
           HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 616

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 313 QTKYLFA*IKYPGVGKSTNLISLLYS 390
           +TK  F  + YP VGKS+ + +L+ S
Sbjct: 299 KTKMTFGLVGYPNVGKSSTINALVGS 324


>SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 350

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 33  HIMEILSFLCLIFTALVIGVIARV 104
           H +EILS   ++FT +V G+  ++
Sbjct: 323 HRLEILSLFSVLFTCIVAGLFLKL 346


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +2

Query: 137 VRTLSRFEFTNNILHWLRWPYN*TT-AFHEEFKLSGILSTVYIL 265
           +  +S  +F   ILHW   P N  + A + E+ LSG    V +L
Sbjct: 245 INDISNEKFNPQILHWHANPLNGLSWALNGEYLLSGGQEGVLVL 288


>SPCC1442.10c |rpb3||DNA-directed RNA polymerase II subunit 3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 297

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +3

Query: 210 LRFMRNLNCREYYPRCT 260
           L + RN +C +Y P+C+
Sbjct: 84  LEYTRNCDCDQYCPKCS 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,761,038
Number of Sequences: 5004
Number of extensions: 35611
Number of successful extensions: 99
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)