Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00718X
         (423 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0254 + 22425038-22425197,22426042-22429307,22430420-22431112     31   0.51 
03_03_0008 - 13674602-13674708,13675272-13675439,13676169-136767...    29   1.5  
01_03_0216 + 13870364-13870472,13871406-13871477,13871603-138716...    28   2.7  
12_01_0381 - 2979069-2979707                                           27   6.2  
02_04_0124 - 19974230-19974847                                         27   6.2  
05_06_0135 + 25921970-25922190,25922662-25922692,25924979-25925578     27   8.2  
03_04_0120 - 17422354-17422530,17423054-17423203,17423297-17423422     27   8.2  

>03_05_0254 + 22425038-22425197,22426042-22429307,22430420-22431112
          Length = 1372

 Score = 30.7 bits (66), Expect = 0.51
 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
 Frame = +3

Query: 36  IMEILSFLCLIFTALVIGVIARVIYLLIKIFTTECALYQDSNLRTIFCIG--SGGHTTEL 209
           + + +++ CL+   +  G +    Y+  +I   E  LY D         G   GG   E+
Sbjct: 716 VPDTIAYTCLLNGLVNEGQVKAASYMFQEIICKE-GLYADCIAYNSMMNGYLKGGQINEI 774

Query: 210 LRFMRNLNCREYYP 251
            R MRN++  E YP
Sbjct: 775 ERLMRNMHENEVYP 788


>03_03_0008 -
           13674602-13674708,13675272-13675439,13676169-13676787,
           13676868-13677330,13677855-13678036,13678093-13678235,
           13678315-13678423,13679000-13679456,13680490-13682473,
           13682507-13682626,13682920-13682971
          Length = 1467

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = +3

Query: 213 RFMRNLNCREYYPRCTFLPITISTVNQKFLKQGTNKVLICLNKIPRSRKVNQSYFS 380
           RF R+ +  + +    ++P T+  V+    K+G+ K L  LN+I RS   N +  S
Sbjct: 758 RFSRSTSFPDNFLNAKYIPETV--VDTPAFKEGSQKQLSPLNRIIRSTSTNDNIHS 811


>01_03_0216 +
           13870364-13870472,13871406-13871477,13871603-13871668,
           13871767-13871823,13871917-13871984,13872068-13872149,
           13872445-13872500,13872645-13872947,13873042-13873128,
           13873199-13873373,13873481-13873602,13873689-13873852,
           13873925-13874179,13874312-13874433,13874542-13874663,
           13875111-13875259,13875346-13875484,13875715-13875750
          Length = 727

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 12/48 (25%), Positives = 22/48 (45%)
 Frame = +3

Query: 267 PITISTVNQKFLKQGTNKVLICLNKIPRSRKVNQSYFSSVFSTIYSTL 410
           P+ +  VN+KFL  G +++   L    R  K+ +  +    S +   L
Sbjct: 339 PVILKEVNEKFLNAGIDRIKANLQSRVRKGKMTEERYEKAMSLVTGVL 386


>12_01_0381 - 2979069-2979707
          Length = 212

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 13/38 (34%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
 Frame = +3

Query: 63  LIFTALVIGVIARVIYLLIKIFTTECALY-QDSNLRTI 173
           L+  A+++G+IA ++YL+++   T    Y QD+ LR +
Sbjct: 24  LVVLAILVGIIALIVYLVLR--PTHPRFYLQDATLRQL 59


>02_04_0124 - 19974230-19974847
          Length = 205

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 60  CLIFTALVIGVIARVIYLLIKIFTTECALYQDSNLRTI 173
           C++   LV+G IA V+YL ++       L QD  LR++
Sbjct: 4   CILALVLVVGFIALVVYLALRPSKPSFYL-QDLQLRSV 40


>05_06_0135 + 25921970-25922190,25922662-25922692,25924979-25925578
          Length = 283

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -1

Query: 276 SLSARMYTVDSIPDNLNSS*NAVVQLYGHRSQCKILFVNSNLD 148
           +LSAR Y V S PD   +       + GH+   +  F+  N D
Sbjct: 145 ALSARYYNVRSFPDGARNCYTLRSLVAGHKYLIRATFMYGNYD 187


>03_04_0120 - 17422354-17422530,17423054-17423203,17423297-17423422
          Length = 150

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = +3

Query: 339 KIPRSRKVNQSYFSSVFSTIYST 407
           +I RSR+V QSY +S+ +T+ +T
Sbjct: 56  QIYRSREVGQSYITSIATTLLAT 78


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,223,744
Number of Sequences: 37544
Number of extensions: 187255
Number of successful extensions: 363
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)