Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00717X
         (347 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein S24|Schizosac...    70   1e-13
SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein S24|Sc...    64   6e-12
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    27   0.63 
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom...    27   0.63 
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    26   1.9  
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa...    25   3.4  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   4.4  
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    24   5.9  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    24   7.8  
SPAC13F5.03c |||glycerol dehydrogenase |Schizosaccharomyces pomb...    24   7.8  

>SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein
           S24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 134

 Score = 69.7 bits (163), Expect = 1e-13
 Identities = 30/54 (55%), Positives = 41/54 (75%)
 Frame = +2

Query: 92  QIVGAQQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFGGGKS 253
           +++  +QMV D+LHPGK  +SK EIREKLA+MYK   + V  FG +T+FGGG+S
Sbjct: 16  RLLQRKQMVVDILHPGKANLSKNEIREKLAQMYKTDSECVQAFGLRTHFGGGRS 69



 Score = 35.1 bits (77), Expect = 0.003
 Identities = 16/28 (57%), Positives = 19/28 (67%)
 Frame = +1

Query: 256 GFALIYDTLDLAKKFXPKHRLARNGLYE 339
           GFALIYD+ +  KKF P +RL R G  E
Sbjct: 71  GFALIYDSTESMKKFEPHYRLVRVGQAE 98



 Score = 33.1 bits (72), Expect = 0.013
 Identities = 17/23 (73%), Positives = 18/23 (78%)
 Frame = +3

Query: 45  MSEGTATIRTRKFMTNRLLARNR 113
           MSE   TIRTRKFMTNRLL R +
Sbjct: 1   MSEAV-TIRTRKFMTNRLLQRKQ 22


>SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein
           S24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 134

 Score = 64.1 bits (149), Expect = 6e-12
 Identities = 25/54 (46%), Positives = 39/54 (72%)
 Frame = +2

Query: 92  QIVGAQQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFGGGKS 253
           +++  +QMV D+LHPGK  +SK ++REKL +MYK     V  FG +T++GGG++
Sbjct: 16  RLLQRKQMVVDILHPGKANISKNDLREKLGQMYKTDASAVQAFGLRTHYGGGRT 69



 Score = 35.5 bits (78), Expect = 0.002
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = +1

Query: 247 QVNGFALIYDTLDLAKKFXPKHRLARNG 330
           +  GFALIYD ++  KKF P +RL R G
Sbjct: 68  RTTGFALIYDDVEAMKKFEPHYRLVRVG 95



 Score = 33.1 bits (72), Expect = 0.013
 Identities = 17/23 (73%), Positives = 18/23 (78%)
 Frame = +3

Query: 45  MSEGTATIRTRKFMTNRLLARNR 113
           MSE   TIRTRKFMTNRLL R +
Sbjct: 1   MSEAV-TIRTRKFMTNRLLQRKQ 22


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
           subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 27.5 bits (58), Expect = 0.63
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -3

Query: 309 LGXELLGQIEC-VVDQSESIDLPPPKFVLKPNTNTTSGVTLYILASFSRISVLL 151
           L  + +  I C ++D S  IDLPPP  ++KP    T      +L   +R S +L
Sbjct: 553 LDRKSISNICCYMMDASTHIDLPPPA-IIKPRCLWTGKQVFTVLMKPNRFSKVL 605


>SPAC22A12.11 |dak1||dihydroxyacetone kinase
           Dak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 27.5 bits (58), Expect = 0.63
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 161 EIREKLAKMYKVTPDVVFVFGFKTNFGG 244
           +++E LAK YK+ P  +F   F T+  G
Sbjct: 286 KVKEALAKEYKINPVRIFAGPFTTSLNG 313


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -1

Query: 77  ASANSRCSFTHFELFSII 24
           +S  SRCSFT FE+ SI+
Sbjct: 777 SSVISRCSFTDFEINSIL 794


>SPBC530.15c ||SPBC661.01|spermidine family transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 516

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 222 VSRQTSEVASQWIRFDLRHTRSGQEVRXQAQVSPQ 326
           ++ +TSE +S+   FDL   +S    R Q+ VS +
Sbjct: 1   MAERTSESSSESASFDLEKQQSNHHDRYQSSVSSE 35


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 243 PPKFVLKPNTNTTSGVTLYILASFS 169
           PPK  LKP+ +T+  ++ Y LA  S
Sbjct: 818 PPKEPLKPSLDTSPELSKYSLAKLS 842


>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = -2

Query: 286 DRVCRRSKRIH*LATSEVCLETEYEHYIGSNLVHFGELLTDLGLADGWFSWM*NIANHLL 107
           D + +  K +H L T+   LET   H +   + +F ++ +   LAD   S   N+  H  
Sbjct: 516 DLIHQCKKFLHTLKTARYYLETVQLHQLKKYVTYFSQIWSTDELAD--ISETKNLVGHDT 573

Query: 106 RAN 98
           + N
Sbjct: 574 KTN 576


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1485

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 220  EYEHYIGSNLVHFGELLTDLGLAD 149
            +YE + G   VHF   LT+ G+ +
Sbjct: 985  DYESHHGEGNVHFNVTLTEAGMKE 1008


>SPAC13F5.03c |||glycerol dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +2

Query: 173 KLAKMYKVTPDVVFVFGFKTNFGGGKSMDSL*STTHSI-WPRSSXPST 313
           +L K+ K  PD   V       GGGK+MDS     HS+  P    P+T
Sbjct: 134 ELDKLRKQCPDDTQVI---IGVGGGKTMDSAKYIAHSMNLPSIICPTT 178


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,474,478
Number of Sequences: 5004
Number of extensions: 27850
Number of successful extensions: 72
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)