Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00717X
(347 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0550 - 30151494-30151526,30151620-30151706,30152458-301526... 69 1e-12
06_03_0440 + 20815528-20815653,20815742-20815912,20816501-208165... 65 2e-11
02_02_0153 - 7258002-7258034,7258137-7258223,7258991-7259161,725... 65 2e-11
06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890... 27 3.1
05_06_0120 + 25748882-25749297,25749411-25749600,25749682-257498... 27 3.1
07_01_1045 + 9131301-9131483,9131652-9131717,9132433-9132513,913... 27 5.3
08_01_1021 + 10310634-10310679,10312880-10313757,10314404-10314640 26 7.1
01_01_0801 - 6241710-6241869,6242522-6242689,6243202-6243269,624... 26 7.1
01_01_0348 + 2769295-2769660,2770082-2770192,2770284-2770358,277... 26 7.1
02_05_0473 + 29319824-29322511,29322659-29322820,29324133-293242... 26 9.3
>01_06_0550 -
30151494-30151526,30151620-30151706,30152458-30152628,
30152716-30152757,30152856-30152939
Length = 138
Score = 68.5 bits (160), Expect = 1e-12
Identities = 29/55 (52%), Positives = 44/55 (80%), Gaps = 1/55 (1%)
Frame = +2
Query: 92 QIVGAQQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVFGFKTNFGGGKS 253
+++ +Q V +V+HPG+P VSK E++EKLAK+Y+V + +FVF F+T+FGGGKS
Sbjct: 21 RLLSRKQFVLEVIHPGRPNVSKAELKEKLAKLYEVKDANCIFVFKFRTHFGGGKS 75
Score = 47.2 bits (107), Expect = 4e-06
Identities = 22/48 (45%), Positives = 28/48 (58%)
Frame = +1
Query: 199 SRCSVRIRFQDKLRRWQVNGFALIYDTLDLAKKFXPKHRLARNGLYEK 342
+ C +F+ + GF LIYD LD AKK+ PK+RL RNGL K
Sbjct: 58 ANCIFVFKFRTHFGGGKSTGFGLIYDNLDAAKKYEPKYRLIRNGLATK 105
Score = 32.3 bits (70), Expect = 0.11
Identities = 13/18 (72%), Positives = 17/18 (94%)
Frame = +3
Query: 63 TIRTRKFMTNRLLARNRW 116
T+RTRKFMTNRLL+R ++
Sbjct: 11 TLRTRKFMTNRLLSRKQF 28
>06_03_0440 +
20815528-20815653,20815742-20815912,20816501-20816584,
20818831-20818917,20819044-20819076
Length = 166
Score = 64.9 bits (151), Expect = 2e-11
Identities = 28/55 (50%), Positives = 43/55 (78%), Gaps = 1/55 (1%)
Frame = +2
Query: 92 QIVGAQQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVFGFKTNFGGGKS 253
+++ +Q V +VLHPG+ VSK +++EKLAK+Y+V + +FVF F+T+FGGGKS
Sbjct: 21 RLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHFGGGKS 75
Score = 41.1 bits (92), Expect = 2e-04
Identities = 19/42 (45%), Positives = 24/42 (57%)
Frame = +1
Query: 199 SRCSVRIRFQDKLRRWQVNGFALIYDTLDLAKKFXPKHRLAR 324
S C +F+ + GF LIYD LD AKK+ PK+RL R
Sbjct: 58 SNCIFVFKFRTHFGGGKSTGFGLIYDNLDAAKKYEPKYRLIR 99
Score = 32.3 bits (70), Expect = 0.11
Identities = 13/18 (72%), Positives = 17/18 (94%)
Frame = +3
Query: 63 TIRTRKFMTNRLLARNRW 116
T+RTRKFMTNRLL+R ++
Sbjct: 11 TLRTRKFMTNRLLSRKQF 28
>02_02_0153 -
7258002-7258034,7258137-7258223,7258991-7259161,
7259261-7259386
Length = 138
Score = 64.9 bits (151), Expect = 2e-11
Identities = 28/55 (50%), Positives = 43/55 (78%), Gaps = 1/55 (1%)
Frame = +2
Query: 92 QIVGAQQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVFGFKTNFGGGKS 253
+++ +Q V +VLHPG+ VSK +++EKLAK+Y+V + +FVF F+T+FGGGKS
Sbjct: 21 RLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHFGGGKS 75
Score = 48.4 bits (110), Expect = 2e-06
Identities = 23/48 (47%), Positives = 28/48 (58%)
Frame = +1
Query: 199 SRCSVRIRFQDKLRRWQVNGFALIYDTLDLAKKFXPKHRLARNGLYEK 342
S C +F+ + GF LIYD LD AKK+ PK+RL RNGL K
Sbjct: 58 SNCIFVFKFRTHFGGGKSTGFGLIYDNLDAAKKYEPKYRLIRNGLATK 105
Score = 32.3 bits (70), Expect = 0.11
Identities = 13/18 (72%), Positives = 17/18 (94%)
Frame = +3
Query: 63 TIRTRKFMTNRLLARNRW 116
T+RTRKFMTNRLL+R ++
Sbjct: 11 TLRTRKFMTNRLLSRKQF 28
>06_01_1087 +
8901950-8902102,8902960-8903996,8904438-8904586,
8905437-8905690,8905785-8908799,8908889-8909001,
8909975-8910164,8910399-8910512,8910591-8910698,
8910941-8911073,8911206-8911408,8911626-8911826
Length = 1889
Score = 27.5 bits (58), Expect = 3.1
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -3
Query: 144 GFPGCKTSQTICCAPTICW 88
G P TS ++C AP +CW
Sbjct: 631 GNPVSSTSLSVCLAPLVCW 649
>05_06_0120 +
25748882-25749297,25749411-25749600,25749682-25749888,
25750234-25750401,25751155-25751390,25751617-25751764
Length = 454
Score = 27.5 bits (58), Expect = 3.1
Identities = 11/36 (30%), Positives = 23/36 (63%)
Frame = -1
Query: 329 PLRANLCLGSNFLARSSVS*IKANPLTCHLRSLS*N 222
P+R G++F A+S+ + + +PL CH+ +++ N
Sbjct: 302 PMRCACPCGTSFNAKSNANGMLMSPLGCHVHAIARN 337
>07_01_1045 +
9131301-9131483,9131652-9131717,9132433-9132513,
9133414-9133482,9133581-9133643,9133933-9133941,
9134259-9134341,9134415-9134517
Length = 218
Score = 26.6 bits (56), Expect = 5.3
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -3
Query: 315 PVLGXELLGQIECVVDQSESIDLPPPKFVLKP 220
PV G +L I+C + E +P P+F L P
Sbjct: 181 PVTGRDLSRAIDCALSGQELPFVPKPRFPLVP 212
>08_01_1021 + 10310634-10310679,10312880-10313757,10314404-10314640
Length = 386
Score = 26.2 bits (55), Expect = 7.1
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = -3
Query: 246 PP--PKFVLKPNTNTTSGVTLYILASFSRISVLLTVGFPGCKTSQTICCAPT 97
PP P V + + +T+Y R+S LLT+ P CK+ + I P+
Sbjct: 318 PPTAPPLVKEFTADYLKKITIYFWLGDERVSKLLTLLAPICKSLEDIKLIPS 369
>01_01_0801 -
6241710-6241869,6242522-6242689,6243202-6243269,
6243372-6243593,6243676-6243774
Length = 238
Score = 26.2 bits (55), Expect = 7.1
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -2
Query: 193 LVHFGELLTDLGLADGWFSWM*NIANHLLRANNLLV 86
LV FG+ +T+L ADG W +A+H R ++++
Sbjct: 5 LVLFGDSITELSFADG--GWGAALADHFARKADVVL 38
>01_01_0348 +
2769295-2769660,2770082-2770192,2770284-2770358,
2770566-2770626,2770853-2770926,2771004-2771108,
2771475-2771582,2771681-2771784,2771939-2772088,
2772163-2772286,2772746-2772925
Length = 485
Score = 26.2 bits (55), Expect = 7.1
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = -3
Query: 294 LGQIECVVDQSESIDLPPPKFVLKPNTNT--TSGVTLYILASFSRISVLLTVGFPG 133
+GQ CVVD + D + + + T+T +SG + + S +I T+G G
Sbjct: 430 VGQYGCVVDLGHNFDDQLGRLIFRCRTDTKHSSGTGVLLAHSKMKIVQYTTIGLRG 485
>02_05_0473 +
29319824-29322511,29322659-29322820,29324133-29324249,
29324360-29324469,29324504-29324540,29324696-29324862,
29325002-29325089,29325163-29325270
Length = 1158
Score = 25.8 bits (54), Expect = 9.3
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +2
Query: 122 DVLHPGKPTVSKTEIREKLAKMYKVTPDVVFV 217
D+L + KT +R L Y + PD +FV
Sbjct: 724 DILSIARSVCCKTSLRAALKAKYGILPDNIFV 755
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,786,998
Number of Sequences: 37544
Number of extensions: 187265
Number of successful extensions: 499
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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