Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00717X
         (347 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   5.5  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   5.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   5.5  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          20   7.3  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          20   7.3  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          20   7.3  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          20   7.3  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          20   7.3  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          20   7.3  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    20   7.3  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    20   9.6  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    20   9.6  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    20   9.6  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    20   9.6  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    20   9.6  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    20   9.6  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    20   9.6  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    20   9.6  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          20   9.6  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.6 bits (41), Expect = 5.5
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 125 VLHPGKPTVSKTEIREK 175
           +LHP + T  K   REK
Sbjct: 15  LLHPSRCTQGKVNYREK 31


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.6 bits (41), Expect = 5.5
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 125 VLHPGKPTVSKTEIREK 175
           +LHP + T  K   REK
Sbjct: 15  LLHPSRCTQGKVNYREK 31


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.6 bits (41), Expect = 5.5
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +2

Query: 38  IQNE*RNSDYSHS 76
           I++E  NSDYSH+
Sbjct: 224 IKHESDNSDYSHT 236


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +2

Query: 134 PGKPTVSKTEIREKL 178
           PGKPT +  E++  +
Sbjct: 137 PGKPTTTSDELKRDI 151


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +2

Query: 134 PGKPTVSKTEIREKL 178
           PGKPT +  E++  +
Sbjct: 137 PGKPTTTSDELKRDI 151


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +2

Query: 134 PGKPTVSKTEIREKL 178
           PGKPT +  E++  +
Sbjct: 137 PGKPTTTSDELKRDI 151


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +2

Query: 134 PGKPTVSKTEIREKL 178
           PGKPT +  E++  +
Sbjct: 137 PGKPTTTSDELKRDI 151


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +2

Query: 134 PGKPTVSKTEIREKL 178
           PGKPT +  E++  +
Sbjct: 137 PGKPTTTSDELKRDI 151


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +2

Query: 134 PGKPTVSKTEIREKL 178
           PGKPT +  E++  +
Sbjct: 137 PGKPTTTSDELKRDI 151


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +2

Query: 134 PGKPTVSKTEIREKL 178
           PGKPT +  E++  +
Sbjct: 137 PGKPTTTSDELKRDI 151


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 147 VGFPGCKTSQTICCAP 100
           +G PG K + T  C P
Sbjct: 163 IGMPGKKNTITYQCCP 178


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 147 VGFPGCKTSQTICCAP 100
           +G PG K + T  C P
Sbjct: 163 IGMPGKKNTITYQCCP 178


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 147 VGFPGCKTSQTICCAP 100
           +G PG K + T  C P
Sbjct: 163 IGMPGKKNTITYQCCP 178


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 147 VGFPGCKTSQTICCAP 100
           +G PG K + T  C P
Sbjct: 163 IGMPGKKNTITYQCCP 178


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 147 VGFPGCKTSQTICCAP 100
           +G PG K + T  C P
Sbjct: 163 IGMPGKKNTITYQCCP 178


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 147 VGFPGCKTSQTICCAP 100
           +G PG K + T  C P
Sbjct: 163 IGMPGKKNTITYQCCP 178


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 147 VGFPGCKTSQTICCAP 100
           +G PG K + T  C P
Sbjct: 231 IGMPGKKNTITYQCCP 246


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 147 VGFPGCKTSQTICCAP 100
           +G PG K + T  C P
Sbjct: 231 IGMPGKKNTITYQCCP 246


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +2

Query: 134 PGKPTVSKTEIR 169
           PGKPT +  E++
Sbjct: 137 PGKPTTTSDELK 148


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,658
Number of Sequences: 438
Number of extensions: 1837
Number of successful extensions: 19
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7936320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)