Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00716
(670 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce... 29 0.61
SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|... 26 4.3
SPBP8B7.05c |||carbonic anhydrase |Schizosaccharomyces pombe|chr... 26 5.6
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog... 26 5.6
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces... 25 7.5
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 25 7.5
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch... 25 7.5
SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4 |Schi... 25 7.5
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1... 25 7.5
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 25 9.9
>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1112
Score = 29.1 bits (62), Expect = 0.61
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +3
Query: 243 LYAPQVIARFNCERLCNSLKRVKKFSNWREPIPEAYFPKLDSLTSSRGWPPRQS 404
+YAP+V F +RL N+L K + + P+ E D+ S+G QS
Sbjct: 996 VYAPRVAYHFKSKRLENALSSFKNQISNQSPMSEEIQADADAFGESKGSDELQS 1049
>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 26.2 bits (55), Expect = 4.3
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -1
Query: 544 KRPSLPVWQSNGPVAIASSTFLLQRSISSMVTNRPSAARFRS 419
+RP+ PVW NGP+ +L S+ ++ + AR R+
Sbjct: 112 RRPNKPVWSLNGPL-----PHVLGNSVVEKISQKNQEARSRA 148
>SPBP8B7.05c |||carbonic anhydrase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 25.8 bits (54), Expect = 5.6
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +2
Query: 479 KKRGRSYRDWTVRLPNGQTRPLDI 550
+KRG W L NGQ + LDI
Sbjct: 207 EKRGLQVHGWIYDLSNGQIKKLDI 230
>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 982
Score = 25.8 bits (54), Expect = 5.6
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Frame = +3
Query: 345 AYFP-KLDSLTSSRG--WPPRQSGMQW--QDLNRAAEGLFVTIDEMERWRRNVE 491
A+FP K+ + S++ SG Q Q++ EG+ + D M +WR NV+
Sbjct: 889 AHFPPKIIEMASNKAAELEAEDSGAQGDTQEVKSKKEGMAIVRDIMRQWRSNVK 942
>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 693
Score = 25.4 bits (53), Expect = 7.5
Identities = 14/64 (21%), Positives = 30/64 (46%)
Frame = +3
Query: 258 VIARFNCERLCNSLKRVKKFSNWREPIPEAYFPKLDSLTSSRGWPPRQSGMQWQDLNRAA 437
+I + R+ + ++ V+ + YF DS + R + P + + Q+L++ A
Sbjct: 108 LINKLRTSRIASKIRTVQVAYLDFTSLESRYFQVHDSFSGLRLYHPSNAAIIRQELSKVA 167
Query: 438 EGLF 449
G+F
Sbjct: 168 HGIF 171
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 25.4 bits (53), Expect = 7.5
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 377 RSQTVKLREVSLRNWLPPVAEFFNS 303
R K+ E+ RNW PPV E+ S
Sbjct: 441 RDARKKIIEIHTRNWDPPVPEWLCS 465
>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 25.4 bits (53), Expect = 7.5
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = +2
Query: 506 WTVRLPNGQTRPLDI-DTLGNMLESSALSPNRELYGSIHNNGHSFTAY 646
+ L N D+ + L L ALS R+ YG NGH+ + Y
Sbjct: 165 YVTNLDNATCSKCDLAENLWMCLTCGALSCGRKQYGGGGGNGHALSHY 212
>SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 25.4 bits (53), Expect = 7.5
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = -1
Query: 583 GAGLQHVAERIDVKRPSLPVWQSNGPVAIASSTFLLQRSISSMVTNRP 440
GA Q + K+PS+PV Q ++ L++RS++S+ + P
Sbjct: 99 GAPKQVSTPDVSEKKPSMPVIQDPIDDSLEKEDGLIRRSMTSLCRHGP 146
>SPBC947.11c |elg1||DNA replication factor C complex subunit
Elg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 920
Score = 25.4 bits (53), Expect = 7.5
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +3
Query: 297 LKRVKKFSNWREPIPEAYFPKLDSLTSSRGWPPRQSGMQWQDLNRAAEGL 446
L +K ++ + I PKL + T+S +PP +S + D N E +
Sbjct: 92 LVTLKVSTSLGQKIENILHPKLSNDTNSTAFPPAKSSGEASDTNILVENI 141
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 25.0 bits (52), Expect = 9.9
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +3
Query: 3 FPSIHSSS*NRSCYSTRRSTHTYYHSTRLHCDGLRRRTPPCV-LARRYRHQPASLSLAFG 179
FPS+ ++ R CY R +++ +LH L + P V ++ R P S ++ G
Sbjct: 697 FPSLRYNTNRRFCYVQMRKPDEAHNALQLHKKLLEEKYPIQVFISDPLRRTPRSGAVYEG 756
Query: 180 LPVY 191
+Y
Sbjct: 757 RELY 760
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,973,134
Number of Sequences: 5004
Number of extensions: 63282
Number of successful extensions: 197
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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