Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00716
         (670 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0257 + 26723858-26724049,26724073-26724230,26724886-267250...    30   1.5  
04_01_0123 - 1283197-1283292,1283330-1284439,1284790-1285177,128...    29   3.3  
09_04_0574 + 18645363-18645870,18645995-18646491,18646631-186466...    28   5.9  
03_01_0608 + 4471738-4472115                                           28   5.9  

>05_06_0257 +
           26723858-26724049,26724073-26724230,26724886-26725024,
           26725130-26725315,26727117-26727310,26728113-26728193,
           26728248-26728338,26728414-26728590
          Length = 405

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 22/94 (23%), Positives = 46/94 (48%)
 Frame = +3

Query: 324 WREPIPEAYFPKLDSLTSSRGWPPRQSGMQWQDLNRAAEGLFVTIDEMERWRRNVEEAIA 503
           W +     ++P  D+  S++    +++ +   D N A E   V +DE +    +++EA+ 
Sbjct: 227 WAKSSDVDFYPHFDANHSAKH-QSKENAIVAYDPNNAPETP-VDLDESDM-TPSIQEALH 283

Query: 504 TGPLDCQTGRLGLLTSIRSATCWSPAPSRRTENC 605
              +D   G++  LTSI  A+ ++ +  +  E C
Sbjct: 284 RSNMDISDGKIHPLTSIHHASTYNSSLCKLMEYC 317


>04_01_0123 - 1283197-1283292,1283330-1284439,1284790-1285177,
            1285523-1287609
          Length = 1226

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/68 (22%), Positives = 31/68 (45%)
 Frame = -1

Query: 472  RSISSMVTNRPSAARFRSCHCIPD*RGGHPRDEVKLSSLGK*ASGIGSLQLLNFLTLFNE 293
            + ++++V  R +  ++R C    D     P+D   L  + +        +LL+FL  ++ 
Sbjct: 824  KKLANLVMVRKANGKWRMCVDFTDLNKACPKDHFPLPRIDQLVDSTAGCELLSFLDAYSG 883

Query: 292  LHKRSQLK 269
             H+ S  K
Sbjct: 884  YHQISMAK 891


>09_04_0574 +
           18645363-18645870,18645995-18646491,18646631-18646696,
           18646921-18646989,18647401-18647466
          Length = 401

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +3

Query: 327 REPIPEAYF-PKLDSLTSSRGWPPRQSGMQWQDLNRAAEGLFVTI 458
           + P P A+F P  DS+ S +     QS  Q Q +  A EGL+ T+
Sbjct: 91  KPPRPAAHFAPPEDSMASHQQQLMYQSHQQQQQMASAMEGLYRTV 135


>03_01_0608 + 4471738-4472115
          Length = 125

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +3

Query: 270 FNCERLCNSLKRVKKFSNW-REPIPE 344
           F CER+C S + +KK   + ++PIPE
Sbjct: 48  FVCERVCTSKRMLKKVGAFSKDPIPE 73


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,572,073
Number of Sequences: 37544
Number of extensions: 466745
Number of successful extensions: 1306
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1305
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)