Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00716
         (670 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110479-18|CAB54365.1|  484|Caenorhabditis elegans Hypothetical...    30   1.3  
Z48621-5|CAA88543.1|  136|Caenorhabditis elegans Hypothetical pr...    30   1.7  
Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical pr...    28   6.9  
U53148-1|AAB37071.1|  175|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>AL110479-18|CAB54365.1|  484|Caenorhabditis elegans Hypothetical
           protein Y105C5B.19 protein.
          Length = 484

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
 Frame = -1

Query: 610 TIQFSVRREGAGLQHVAERID----VKRPSLPVWQSNGPVAIASSTFLLQRSISSM 455
           T++++   EG+  Q   + +D    V+R +LP+  S+ P+A  SS  LLQ S   M
Sbjct: 140 TVEWTNTSEGSTKQFCRDWLDGDGMVRRKTLPIEYSSSPIAQTSSAPLLQASKHGM 195


>Z48621-5|CAA88543.1|  136|Caenorhabditis elegans Hypothetical
           protein R07B1.6 protein.
          Length = 136

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 588 RRTENCMVRY-TTTGTVSPRTCTTRNTD 668
           R T++C     TTT T++P TCTT  TD
Sbjct: 16  RITDSCAATSGTTTTTIAPTTCTTCTTD 43


>Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical
           protein C06B8.7 protein.
          Length = 3118

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = -1

Query: 541 RPSLPVWQSNGPVAIASSTFLLQRSISSMVTNRPSAARF 425
           R  L +  +NGP  IA+STF   R     V N   A  F
Sbjct: 316 RDGLQLLDANGPAIIANSTFSYNRGHGISVVNTTDARIF 354


>U53148-1|AAB37071.1|  175|Caenorhabditis elegans Hypothetical
           protein C26F1.7 protein.
          Length = 175

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/34 (29%), Positives = 23/34 (67%), Gaps = 3/34 (8%)
 Frame = +1

Query: 148 INLHHYHWHLVYPFTANDLSIVAKD---RRGELF 240
           +++HH H H++YP   +D+ ++++    R G++F
Sbjct: 105 LSVHHLHMHIIYPI--SDMGLISRKLTFRPGKVF 136


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,734,231
Number of Sequences: 27780
Number of extensions: 366768
Number of successful extensions: 890
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)