Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00712
         (606 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8C9.11 |||BolA domain protein|Schizosaccharomyces pombe|chr ...    62   5e-11
SPCC4B3.11c |||conserved eukaryotic protein|Schizosaccharomyces ...    60   2e-10
SPBC16E9.06c |uvi31||BolA domain UV inducedv protein Uvi31|Schiz...    32   0.057
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po...    28   1.2  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    27   2.1  
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    25   6.5  

>SPAC8C9.11 |||BolA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 80

 Score = 62.5 bits (145), Expect = 5e-11
 Identities = 29/51 (56%), Positives = 35/51 (68%)
 Frame = +3

Query: 357 LDAVHVEVTDESDGCGAKFSVLIVSDKFKGKPLLARHRLVNTLLQEELKTI 509
           L+  H+E+ D S GCG  F V+IVS  F+GK  LARHRLVN  LQE +K I
Sbjct: 15  LEPTHIEIQDMSGGCGQNFEVIIVSPLFEGKSTLARHRLVNHKLQEVIKDI 65


>SPCC4B3.11c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 116

 Score = 60.1 bits (139), Expect = 2e-10
 Identities = 27/62 (43%), Positives = 43/62 (69%)
 Frame = +3

Query: 324 EKYLKEKLTQELDAVHVEVTDESDGCGAKFSVLIVSDKFKGKPLLARHRLVNTLLQEELK 503
           E+ +K+ LT++L    + V D S GCG+ + V I S  F+GK  LA+HRLVN++L+EE++
Sbjct: 33  ERRIKDILTEKLSPSSLRVIDVSGGCGSMYQVAIKSKAFQGKNTLAQHRLVNSILKEEIR 92

Query: 504 TI 509
            +
Sbjct: 93  NM 94


>SPBC16E9.06c |uvi31||BolA domain UV inducedv protein
           Uvi31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 102

 Score = 32.3 bits (70), Expect = 0.057
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = +3

Query: 369 HVEVTDESDGCGAKFSVLIVSDKFKGKPLLARHRLVNTLLQEE 497
           H+ +    D     F + IVS +F G   +ARHRLV  LL++E
Sbjct: 40  HIAMKGVPDTNETHFRLEIVSPEFSGMSRVARHRLVYGLLKDE 82


>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 556

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = +3

Query: 402 GAKFSVLIVSDKFKGKPLLARHRLVNTLLQEELKTITRSPRKP*LLISG 548
           G   + L+V DKF+ KPL + H  +       +K IT SP +  +L SG
Sbjct: 392 GGNDNALMVWDKFEEKPLYSFHNHI-----AAVKAITWSPHQRGILASG 435


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -1

Query: 357 VPGSASPLNISPYTPYS 307
           VPGS SPLN SP++  S
Sbjct: 835 VPGSTSPLNASPFSVLS 851


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +3

Query: 300 LLMNMVYTEKYLKEKLTQELDAVHVEVT 383
           +L NM+  E+  KE L QEL+++ V+++
Sbjct: 385 VLSNMLDNERREKEALLQELESLRVQLS 412


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,346,171
Number of Sequences: 5004
Number of extensions: 43681
Number of successful extensions: 99
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)