Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00712
         (606 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88168-2|AAC24398.1|  108|Caenorhabditis elegans Hypothetical pr...    52   4e-07
AL132876-10|CAC48129.1|  106|Caenorhabditis elegans Hypothetical...    52   4e-07
Z81120-6|CAH10814.1|   98|Caenorhabditis elegans Hypothetical pr...    45   5e-05
U80444-7|AAO12447.1|  380|Caenorhabditis elegans Hypothetical pr...    27   7.9  
U80444-5|AAB37791.1|  397|Caenorhabditis elegans Hypothetical pr...    27   7.9  

>U88168-2|AAC24398.1|  108|Caenorhabditis elegans Hypothetical
           protein K11H12.1 protein.
          Length = 108

 Score = 51.6 bits (118), Expect = 4e-07
 Identities = 31/72 (43%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
 Frame = +3

Query: 327 KYLKEKLTQELDAVHVEVTDESD------GCGAKFSVLIVSDKFKGKPLLARHRLVNTLL 488
           + LKEKL       H+EV  ES       G    F V +VSD+F+GK ++ RHRLVNT L
Sbjct: 11  RLLKEKLFAAFQPKHLEVECESHLHNVPKGAEKHFRVQVVSDEFEGKRVIERHRLVNTCL 70

Query: 489 QEELKTITRSPR 524
            +EL T   + R
Sbjct: 71  AKELATTVHALR 82


>AL132876-10|CAC48129.1|  106|Caenorhabditis elegans Hypothetical
           protein Y105E8A.11 protein.
          Length = 106

 Score = 51.6 bits (118), Expect = 4e-07
 Identities = 25/65 (38%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
 Frame = +3

Query: 312 MVYTEKYLKEKLTQELDA-VHVEVTDESDGCGAKFSVLIVSDKFKGKPLLARHRLVNTLL 488
           M   E  + + LT+ +D    VEV D S+GCG+ F V++ +  FKGK  +A+H+ V ++L
Sbjct: 30  MSEAELKMSKLLTEGIDGCTRVEVHDVSNGCGSMFDVVVEAAGFKGKSKVAQHKQVTSIL 89

Query: 489 QEELK 503
           +E++K
Sbjct: 90  REQIK 94


>Z81120-6|CAH10814.1|   98|Caenorhabditis elegans Hypothetical
           protein T12D8.10 protein.
          Length = 98

 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 24/49 (48%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
 Frame = +3

Query: 345 LTQELDAVHVEVTDESDGC-GAKFSVLIVSDKFKGKPLLARHRLVNTLL 488
           LT+ +    ++V DES GC G KF +LIVS+ F+GK  L  HRLV   L
Sbjct: 12  LTEAIKPQILKVVDESGGCDGYKFRLLIVSEAFEGKCTLQSHRLVQAAL 60


>U80444-7|AAO12447.1|  380|Caenorhabditis elegans Hypothetical
           protein F26B1.2c protein.
          Length = 380

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -2

Query: 560 IIVSSTDQQLRFSG*TRDCLQFLLKQCVHQSMPGKKRF 447
           I +  T+QQ+  +       Q+LL+QCV  S  G++RF
Sbjct: 346 ITIKGTEQQIHSA-------QYLLQQCVRNSTQGRERF 376


>U80444-5|AAB37791.1|  397|Caenorhabditis elegans Hypothetical
           protein F26B1.2a protein.
          Length = 397

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -2

Query: 560 IIVSSTDQQLRFSG*TRDCLQFLLKQCVHQSMPGKKRF 447
           I +  T+QQ+  +       Q+LL+QCV  S  G++RF
Sbjct: 363 ITIKGTEQQIHSA-------QYLLQQCVRNSTQGRERF 393


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,019,083
Number of Sequences: 27780
Number of extensions: 244266
Number of successful extensions: 573
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)