Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00712
         (606 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    26   0.25 
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   3.1  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   5.4  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   9.4  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 26.2 bits (55), Expect = 0.25
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -1

Query: 351 GSASPLNISPYTPYSLIKIHAPSSKIGHN 265
           G ASP++ S Y PYS      P+SKIG +
Sbjct: 131 GYASPMSTSSYDPYS------PNSKIGRD 153


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 479 HIASRGTEDNHAFTQKTLTV 538
           H+  + T DN AFTQ +L +
Sbjct: 175 HVTFKLTFDNRAFTQASLAM 194


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 13/59 (22%), Positives = 25/59 (42%)
 Frame = +3

Query: 306 MNMVYTEKYLKEKLTQELDAVHVEVTDESDGCGAKFSVLIVSDKFKGKPLLARHRLVNT 482
           +N + TE+ L +      +   V ++       +KF +   +D      LL RH  +N+
Sbjct: 189 LNSLDTEQILDDMYNNNTEWEIVHMSHSESTIDSKFGLGFTTDLLSYNILLRRHYSMNS 247


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
            ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 10/39 (25%), Positives = 18/39 (46%)
 Frame = -3

Query: 517  ERVIVFXXXXSNVFTNLCLARRGFPLNLSDTMRTENLAP 401
            +R +VF      + T+  +++ G  LNL   +  E   P
Sbjct: 956  QRGLVFVKGKGQLLTHYLVSKDGVSLNLDSDLPVEPTHP 994


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,591
Number of Sequences: 438
Number of extensions: 2721
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)