Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00711X
         (548 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1115 - 24076506-24076677,24077169-24077266,24077622-240777...    31   0.80 
07_03_0746 - 21169858-21169929,21170087-21170235,21170498-211717...    29   3.2  
03_04_0196 - 18365840-18366701,18366875-18366950,18366989-183672...    27   9.9  

>07_03_1115 -
           24076506-24076677,24077169-24077266,24077622-24077743,
           24079059-24079235,24079809-24079897,24079919-24079965,
           24080423-24080519,24080600-24080682,24080716-24080796,
           24081043-24081199,24081323-24081750,24081985-24082014,
           24083180-24083300,24083432-24083697
          Length = 655

 Score = 30.7 bits (66), Expect = 0.80
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 542 RHHTNNPQNIGRYTWIAWNVCP 477
           +HH   P+N+G Y  + WNV P
Sbjct: 574 QHHVQLPENLGSYQLLEWNVQP 595


>07_03_0746 -
           21169858-21169929,21170087-21170235,21170498-21171793,
           21171899-21171971
          Length = 529

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 278 WVCNDNSDC*TISFSKRTYEGTASIA 355
           W CN+ +DC  I   K  YE    +A
Sbjct: 397 WACNNGADCSAIQLGKACYEPNTLVA 422


>03_04_0196 -
           18365840-18366701,18366875-18366950,18366989-18367237,
           18367819-18367837
          Length = 401

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 18/66 (27%), Positives = 28/66 (42%)
 Frame = -3

Query: 273 RRKRNGSFIHN*AITSVLLMLINLNLPFIYVDRLGVHIKKNMLQATIEHRTNTPQNHNST 94
           R  ++ SF H  A    LL  I      + VD  G H+       T++ +  T   HN T
Sbjct: 68  RMLKDRSFAHTRAYDPELLQKIGWENCAV-VDEPGSHLLTLQFLCTLQRKPRTNDIHNPT 126

Query: 93  ITITYK 76
           + + +K
Sbjct: 127 LRLMHK 132


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,252,351
Number of Sequences: 37544
Number of extensions: 198979
Number of successful extensions: 301
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 301
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)