Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00710
         (707 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         24   1.1  
AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory recept...    24   1.4  
AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory recept...    24   1.4  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    23   3.2  

>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 285 NPAYRIRSMRCQPPR 329
           NP YR R+ R +PPR
Sbjct: 230 NPYYRPRTSRTEPPR 244


>AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory receptor
           candidate 18 protein.
          Length = 387

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -2

Query: 127 DEICGSMSLMFLRWLS-TFEVIFWPSSASLGRVWAQSL 17
           +E+C S S+  L W+S  F V+   + A L  V  Q++
Sbjct: 232 EEVCDSFSIFGLVWISLIFVVLIGDAYAVLNSVLFQNV 269


>AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory receptor
           candidate 17 protein.
          Length = 372

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -2

Query: 127 DEICGSMSLMFLRWLS-TFEVIFWPSSASLGRVWAQSL 17
           +E+C S S+  L W+S  F V+   + A L  V  Q++
Sbjct: 232 EEVCDSFSIFGLVWISLIFVVLIGDAYAVLNSVLFQNV 269


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +2

Query: 476 IGDSSEPGQDPRGSPLTRWLPTTAG 550
           +  +S P   P G  L +WLP   G
Sbjct: 196 VSPASLPSISPSGGFLPKWLPPLQG 220


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,278
Number of Sequences: 336
Number of extensions: 4088
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18738900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)