Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00710
(707 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch... 30 0.28
SPBC651.03c |gyp10||GTPase activating protein Gyp10|Schizosaccha... 29 0.86
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 29 0.86
SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual 28 1.5
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|... 28 1.5
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe... 27 3.5
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 26 4.6
SPCC4B3.05c |hem12||uroporphyrinogen decarboxylase |Schizosaccha... 26 4.6
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 25 8.0
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha... 25 8.0
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 25 8.0
>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 794
Score = 30.3 bits (65), Expect = 0.28
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = -2
Query: 88 WLSTFEVIFWPSSASLGRVWAQSLL 14
W+ TF +W ++A LG++W+ +L
Sbjct: 611 WIDTFGSEYWENAARLGKIWSYLIL 635
>SPBC651.03c |gyp10||GTPase activating protein
Gyp10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 373
Score = 28.7 bits (61), Expect = 0.86
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = -2
Query: 484 VPDVHHYIRVSVLNADHHVVVRFGSPQHGSLRVAEVQNEAILFLCSEVCRH 332
+ + + I++++LN+D + G HG L + ++ + LC CRH
Sbjct: 6 IKQLKNEIKIALLNSDVETLSHIGKEGHGFL-MKSLRKSVWVSLCGLSCRH 55
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 28.7 bits (61), Expect = 0.86
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 293 LPDTVDEMSTSTHVSAYFRTKEKDG 367
LPD V+ +ST+ H AY E+DG
Sbjct: 671 LPDLVNRLSTTGHFLAYTANLERDG 695
>SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual
Length = 264
Score = 27.9 bits (59), Expect = 1.5
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = +1
Query: 337 GILPNKGKGWLHSVPRQP*GNHAEENQIGRLHGDRHSERIPVCSDGHRGQLRTWPGSARV 516
G L N + V +P +AE ++ L G P C + + L TWPG+ ++
Sbjct: 26 GTLGNDADVKTNYVSLKPSSYYAELYKLNHLEGAHVIMLGPNCEEAAKTALHTWPGALQI 85
>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
1|||Manual
Length = 809
Score = 27.9 bits (59), Expect = 1.5
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Frame = +2
Query: 296 PDTVDEMSTS--THVSAYFRTKEKDGFILYLGNPKGTMLRRTKSDDYMVIGIQNGYPYVV 469
PDT D S+S T VS + ++D I+ N + + D G+P +
Sbjct: 77 PDTYDSSSSSSTTSVSDMLQLDDRDKVIVSERNSMCSTVNYPTWWDSC-----GGFPGFL 131
Query: 470 MDIGDSSEPGQDPRGSP 520
+ + D SEPG+ SP
Sbjct: 132 LSLNDISEPGETGEASP 148
>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 310
Score = 26.6 bits (56), Expect = 3.5
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +1
Query: 508 ARVSIDKMVADNRWYQVIVDRLGR 579
A V+ + V D+ +Y+V+++RLGR
Sbjct: 285 ANVTFLRTVDDDEFYEVLIERLGR 308
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 26.2 bits (55), Expect = 4.6
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +2
Query: 389 PKGTMLRRTKSDDYMVIGIQNGYP 460
P+GT++++ SDD M G++ P
Sbjct: 332 PEGTIIKKESSDDAMFSGLKKSKP 355
>SPCC4B3.05c |hem12||uroporphyrinogen decarboxylase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -3
Query: 504 SWPGSELSPMSITTYGYPF 448
SW G ELSP T Y YP+
Sbjct: 208 SWAG-ELSPEDFTEYAYPY 225
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -3
Query: 348 RKYADTCVEVDISSTVSGRRGCNVDHRS--NVTQ 253
R+Y D CV+ + GR + D+RS ++TQ
Sbjct: 907 RRYIDICVQRQLREAFDGRPDFSKDYRSLLSITQ 940
>SPAC13G7.04c |mac1||membrane anchored protein Mac1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 756
Score = 25.4 bits (53), Expect = 8.0
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = +1
Query: 319 NLHARVGILPNKGKGWLHSVPRQP*GN--HAEENQIGRLHGDRHSERIPVCSDGH 477
+LHA+ G+L N G G + PR N HA+ + G R + R D H
Sbjct: 475 DLHAQAGMLKNVGNG-PRNAPRNNSSNNLHAQGGMPMNMRGPRGAPRNNSSGDLH 528
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -3
Query: 87 GSQHSKSFSGPRQPAWAGSGPSPCWS 10
GS+ SG R PAW +P W+
Sbjct: 842 GSKTPAWNSGSRTPAWNSGNKTPAWN 867
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,108,375
Number of Sequences: 5004
Number of extensions: 66351
Number of successful extensions: 190
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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