Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00710
         (707 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0873 + 8564560-8564647,8568122-8568309                           29   3.6  
06_03_0152 + 17287133-17287490,17288541-17288734,17289349-172895...    29   3.6  
01_06_0356 + 28662956-28664043,28664255-28665139,28665227-286658...    28   6.3  
08_02_1571 - 27935756-27935950,27936048-27936199,27936294-279364...    28   8.4  
02_04_0121 - 19943988-19944251,19944534-19944734,19944802-199451...    28   8.4  

>08_01_0873 + 8564560-8564647,8568122-8568309
          Length = 91

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = -3

Query: 57  PRQPAWAGSGPSP 19
           PR+PAW GS PSP
Sbjct: 74  PRKPAWPGSSPSP 86


>06_03_0152 +
           17287133-17287490,17288541-17288734,17289349-17289557,
           17289640-17289742,17290128-17290291,17290554-17290692,
           17290908-17291078,17291162-17291298,17291445-17291759,
           17291906-17291965,17292372-17292511,17292691-17292788,
           17292875-17293387
          Length = 866

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +3

Query: 3   ELATSKDWAQTLPKLADEGQKMTSNVESHLKNINDM 110
           EL+  + + +   +LA+ G  M  + ESH++++NDM
Sbjct: 190 ELSAEELFEKKKAQLAEIGMSMLEDPESHIRSLNDM 225


>01_06_0356 +
           28662956-28664043,28664255-28665139,28665227-28665840,
           28665929-28666338
          Length = 998

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 622 ILSTPRRLTYPDIILSSTWTKKSPSCTW 705
           +L    ++  P+ IL+S WT  +P C+W
Sbjct: 33  LLDFKEQVKDPNGILASNWTASAPFCSW 60


>08_02_1571 -
           27935756-27935950,27936048-27936199,27936294-27936403,
           27936845-27937050,27937212-27937295,27937367-27937525,
           27937621-27937728,27938103-27938278,27938376-27938462,
           27938546-27938657,27938737-27938817,27938890-27938943,
           27939107-27939183,27939262-27939331,27939552-27939666,
           27939840-27939937,27940041-27940179,27940267-27940868,
           27941270-27941399,27941471-27941529
          Length = 937

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/28 (35%), Positives = 22/28 (78%)
 Frame = +3

Query: 45  LADEGQKMTSNVESHLKNINDMEPQISS 128
           +AD+ ++MT+++E++ K IND++ +  S
Sbjct: 432 MADQIEQMTTSLEANQKQINDLQEKYDS 459


>02_04_0121 -
           19943988-19944251,19944534-19944734,19944802-19945124,
           19945283-19945316,19945479-19945856,19946425-19946678,
           19946791-19946938,19947052-19947198,19947287-19947664
          Length = 708

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 344 FRTKEKDGFILYLGNPKGTMLRRTKSDDYMVIGIQNGY 457
           F  +E  G  L   +PKG ++R    D +  I +Q GY
Sbjct: 306 FSIQEDAGGGLVFWHPKGAIIRHVLEDSWKQIHLQRGY 343


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,948,688
Number of Sequences: 37544
Number of extensions: 507425
Number of successful extensions: 1605
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1604
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)