Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00710
(707 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 50 2e-06
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 50 2e-06
D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein. 50 2e-06
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 50 2e-06
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 50 2e-06
U21318-3|AAC46667.1| 175|Caenorhabditis elegans Hypothetical pr... 31 0.81
Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical pr... 30 1.4
U10402-5|AAA19066.2| 650|Caenorhabditis elegans Tryptophanyl (w... 30 1.4
Z68011-2|CAA92013.2| 381|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z49888-2|CAA90061.1| 1071|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical pr... 28 7.5
AF132883-1|AAD25092.1| 925|Caenorhabditis elegans UNC-52/Perlec... 28 7.5
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
K08C7.3b protein.
Length = 3672
Score = 49.6 bits (113), Expect = 2e-06
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Frame = +2
Query: 263 FDRWSTLQPRLPDTVDEMSTSTHVSAYFRTKEKDGFILYLGNPKGTM-LRRTKSDDYMVI 439
F++ S+L +P V + +S YFRT+++ G L+ GN + + R + DY+
Sbjct: 2696 FEKGSSLDLNIPQRVTRSAAHADISFYFRTEQEHGIPLFFGNEETAVGSRAVPTADYVAA 2755
Query: 440 GIQNGYPYVVMDIGDS 487
I+ G P + +D+GD+
Sbjct: 2756 EIEYGRPKITVDLGDA 2771
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
K08C7.3a protein.
Length = 3704
Score = 49.6 bits (113), Expect = 2e-06
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Frame = +2
Query: 263 FDRWSTLQPRLPDTVDEMSTSTHVSAYFRTKEKDGFILYLGNPKGTM-LRRTKSDDYMVI 439
F++ S+L +P V + +S YFRT+++ G L+ GN + + R + DY+
Sbjct: 2696 FEKGSSLDLNIPQRVTRSAAHADISFYFRTEQEHGIPLFFGNEETAVGSRAVPTADYVAA 2755
Query: 440 GIQNGYPYVVMDIGDS 487
I+ G P + +D+GD+
Sbjct: 2756 EIEYGRPKITVDLGDA 2771
>D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein.
Length = 1518
Score = 49.6 bits (113), Expect = 2e-06
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Frame = +2
Query: 263 FDRWSTLQPRLPDTVDEMSTSTHVSAYFRTKEKDGFILYLGNPKGTM-LRRTKSDDYMVI 439
F++ S+L +P V + +S YFRT+++ G L+ GN + + R + DY+
Sbjct: 510 FEKGSSLDLNIPQRVTRSAAHADISFYFRTEQEHGIPLFFGNEETAVGSRAVPTADYVAA 569
Query: 440 GIQNGYPYVVMDIGDS 487
I+ G P + +D+GD+
Sbjct: 570 EIEYGRPKITVDLGDA 585
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 49.6 bits (113), Expect = 2e-06
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Frame = +2
Query: 263 FDRWSTLQPRLPDTVDEMSTSTHVSAYFRTKEKDGFILYLGNPKGTM-LRRTKSDDYMVI 439
F++ S+L +P V + +S YFRT+++ G L+ GN + + R + DY+
Sbjct: 2696 FEKGSSLDLNIPQRVTRSAAHADISFYFRTEQEHGIPLFFGNEETAVGSRAVPTADYVAA 2755
Query: 440 GIQNGYPYVVMDIGDS 487
I+ G P + +D+GD+
Sbjct: 2756 EIEYGRPKITVDLGDA 2771
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 49.6 bits (113), Expect = 2e-06
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Frame = +2
Query: 263 FDRWSTLQPRLPDTVDEMSTSTHVSAYFRTKEKDGFILYLGNPKGTM-LRRTKSDDYMVI 439
F++ S+L +P V + +S YFRT+++ G L+ GN + + R + DY+
Sbjct: 2696 FEKGSSLDLNIPQRVTRSAAHADISFYFRTEQEHGIPLFFGNEETAVGSRAVPTADYVAA 2755
Query: 440 GIQNGYPYVVMDIGDS 487
I+ G P + +D+GD+
Sbjct: 2756 EIEYGRPKITVDLGDA 2771
>U21318-3|AAC46667.1| 175|Caenorhabditis elegans Hypothetical
protein K03H9.1 protein.
Length = 175
Score = 31.1 bits (67), Expect = 0.81
Identities = 11/44 (25%), Positives = 25/44 (56%)
Frame = +1
Query: 430 HGDRHSERIPVCSDGHRGQLRTWPGSARVSIDKMVADNRWYQVI 561
+ + + E+IP+ DG G L T+ +++ ++K+ D W + +
Sbjct: 52 YNELNREKIPISVDGRSGLLETFKDKSKLPVEKVPEDVLWEKAL 95
>Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical
protein C29A12.4 protein.
Length = 1560
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +1
Query: 526 KMVADNRWYQVIVDRLGRRVKLSIRESWTMERILSTP 636
K ++DN W+++ V RLG+++ L + W+ L P
Sbjct: 769 KSLSDNHWHELQVRRLGQKLLLYLDGFWSHSIYLQNP 805
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/54 (25%), Positives = 30/54 (55%)
Frame = +2
Query: 320 TSTHVSAYFRTKEKDGFILYLGNPKGTMLRRTKSDDYMVIGIQNGYPYVVMDIG 481
+S +S +FRT DG ILY G + + + DY+ + + + ++++++G
Sbjct: 487 SSGSLSFHFRTTSSDGLILYHG------VMQHNATDYVAFELIDSHLFMIINLG 534
>U10402-5|AAA19066.2| 650|Caenorhabditis elegans Tryptophanyl (w)
trna synthetaseprotein 2, isoform a protein.
Length = 650
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = +2
Query: 284 QPRLPDTVDEMSTSTHVSAYFRTKEKDGFILYLGNPKGTM 403
QPR P+ + +STSTH + YF + G I +LGN G++
Sbjct: 304 QPRDPNNLRLLSTSTHPTIYFTGIQPTG-IPHLGNFFGSI 342
>Z68011-2|CAA92013.2| 381|Caenorhabditis elegans Hypothetical
protein T21B6.2 protein.
Length = 381
Score = 29.5 bits (63), Expect = 2.5
Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Frame = +1
Query: 430 HGDRHSERIPVCSDGHRGQL--RTWPGSARVSIDKMVADNRW----YQVIVDRLGRRVKL 591
HGDR E +P SD H R W V ID+ ++ YQ V + R K+
Sbjct: 28 HGDRAPENLPYPSDPHNETFWPRGWNQLTNVGIDQATKLGKFLRRRYQGSVLPVFDRKKI 87
Query: 592 SIRES 606
SIR S
Sbjct: 88 SIRSS 92
>Z49888-2|CAA90061.1| 1071|Caenorhabditis elegans Hypothetical
protein F47A4.5 protein.
Length = 1071
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -1
Query: 548 QRLSATILSMETLADPGQVRSCPRCPSLHTGIRSECRSPCS 426
+ L+A++ + E LA + RCP + G RS CR CS
Sbjct: 657 RHLAASLQNQEMLAIL-KAAGATRCPKGYKGCRSNCRHDCS 696
>Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical protein
ZC101.2e protein.
Length = 3375
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/50 (28%), Positives = 32/50 (64%)
Frame = +2
Query: 332 VSAYFRTKEKDGFILYLGNPKGTMLRRTKSDDYMVIGIQNGYPYVVMDIG 481
V+ F+T++++G +L+ G + T+ + +DY+ +GI NG+ + ++G
Sbjct: 3209 VAFKFKTEQQNGVLLWQGQ-RPTV---QQMEDYISVGIVNGHLHFSYELG 3254
>Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical protein
ZC101.2e protein.
Length = 3375
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/50 (28%), Positives = 32/50 (64%)
Frame = +2
Query: 332 VSAYFRTKEKDGFILYLGNPKGTMLRRTKSDDYMVIGIQNGYPYVVMDIG 481
V+ F+T++++G +L+ G + T+ + +DY+ +GI NG+ + ++G
Sbjct: 3209 VAFKFKTEQQNGVLLWQGQ-RPTV---QQMEDYISVGIVNGHLHFSYELG 3254
>AF132883-1|AAD25092.1| 925|Caenorhabditis elegans UNC-52/Perlecan
protein.
Length = 925
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/50 (28%), Positives = 32/50 (64%)
Frame = +2
Query: 332 VSAYFRTKEKDGFILYLGNPKGTMLRRTKSDDYMVIGIQNGYPYVVMDIG 481
V+ F+T++++G +L+ G + T+ + +DY+ +GI NG+ + ++G
Sbjct: 759 VAFKFKTEQQNGVLLWQGQ-RPTV---QQMEDYISVGIVNGHLHFSYELG 804
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,578,709
Number of Sequences: 27780
Number of extensions: 390493
Number of successful extensions: 1220
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1215
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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