Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00710
         (707 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   2.8  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   3.7  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    21   8.7  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 576 SSSKTLNPRELDNGTDTIHSKEADLPGHHTIFNLDKEK 689
           SSS++ +P  L +     H+KE     HH   N D EK
Sbjct: 39  SSSRSPSPSLLTSQPHQDHNKEKSKNNHHC--NQDTEK 74


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +1

Query: 514 VSIDKMVADNRWYQVIVDRLGRRVKLSIRESWTMERILSTP 636
           +SID+ +A  +  +    +  RRV L+I   W +   + +P
Sbjct: 280 ISIDRYIAVTQPIKYAKHKNNRRVWLTILLVWAISAAIGSP 320


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II
          large subunit protein.
          Length = 296

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = -3

Query: 48 PAWAGSGPSPC 16
          P+W G  P PC
Sbjct: 29 PSWDGKMPQPC 39


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,343
Number of Sequences: 438
Number of extensions: 4519
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)