Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00708
         (575 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0444 + 29436021-29436092,29437910-29437998,29438510-294385...    70   2e-12
02_05_0396 - 28600855-28601475,28601579-28601761,28601970-286021...    30   1.5  
06_01_0212 - 1611855-1611941,1613447-1613521,1613603-1613665,161...    29   2.0  
02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704     29   2.7  
08_02_1620 - 28288152-28288353,28288469-28288557,28288634-282888...    27   8.1  
07_01_0985 - 8297560-8297610,8297728-8297939,8298327-8298449,829...    27   8.1  

>01_06_0444 +
           29436021-29436092,29437910-29437998,29438510-29438573,
           29439213-29439289,29439358-29439418,29439508-29439615,
           29440139-29440168
          Length = 166

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 40/84 (47%), Positives = 52/84 (61%), Gaps = 7/84 (8%)
 Frame = +2

Query: 251 GNANDDERTYYIFEKDALVNKFISVPKDKGSLNCAIFNAGIIEAVLTRSGFPAKVTAHW- 427
           G  ++DE  Y I EK+ LVN+FISVPKD G+ NC  F AGI   VL  +GFPA VTAH+ 
Sbjct: 83  GTEHEDE--YMISEKELLVNRFISVPKDMGAFNCGAFVAGI--GVLENAGFPAVVTAHFV 138

Query: 428 ------HKGTTYMVKFDDSVITRD 481
                    TT ++KF + V+ R+
Sbjct: 139 PIEGQQRPRTTILIKFAEEVLQRE 162



 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 24/52 (46%), Positives = 37/52 (71%)
 Frame = +3

Query: 3   EVSLAFYALLFSEIVQYSQNRSHSIQDLQFKLSEIGQDVGTRLLDLYFVRER 158
           EVSL+ +A LFSE+VQY+Q +  +I +L+ +L + G  VG R+L+L   RE+
Sbjct: 24  EVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHREK 75


>02_05_0396 -
           28600855-28601475,28601579-28601761,28601970-28602129,
           28602217-28602795,28603044-28603618,28604161-28604176,
           28605566-28605663,28605774-28606286
          Length = 914

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -3

Query: 417 VTFAGNPLLVKTASMMPALKMAQFNEPLSFGTLINLF 307
           +T    P+L+   + MP      +N  L FGT+ N F
Sbjct: 804 ITLTNLPVLIGATASMPPATAVNYNSWLLFGTIFNFF 840


>06_01_0212 -
           1611855-1611941,1613447-1613521,1613603-1613665,
           1613745-1613810,1614133-1614202,1614513-1614683,
           1615504-1615604,1616140-1616187,1616575-1616683,
           1617092-1617248,1617372-1617521,1618262-1618380,
           1618841-1619061
          Length = 478

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +3

Query: 186 NMLLFIKSTLWKVLFGKEADKLEMRMMMKGPTIFSRKML 302
           ++ L I      +LF ++ D LEM M+ K PT    KML
Sbjct: 82  SIFLIINEEEKAMLFSRKTDVLEMLMVEKAPTALIAKML 120


>02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704
          Length = 748

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -3

Query: 432 LCQCAVTFAGNPLLVKTASMMPALKMAQFNEPLSF-GTLIN 313
           LC C+  F GNP L+     +   + ++F  P S  GT IN
Sbjct: 280 LCNCSAGFEGNPYLLDGCQDINECEDSRFKYPCSVPGTCIN 320


>08_02_1620 -
           28288152-28288353,28288469-28288557,28288634-28288828,
           28289082-28289423,28290227-28291672,28292590-28292666,
           28293160-28294509,28295921-28296029,28296896-28297007,
           28297800-28297957
          Length = 1359

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 200 KQ*HIQQFYLTFAIPLSHKIQVEQSRAHILSDFR 99
           +Q H QQ  L    P S   Q++QS+ H++S F+
Sbjct: 489 QQQHAQQSSLGLMQPQSQHNQLQQSQQHLMSQFQ 522


>07_01_0985 -
           8297560-8297610,8297728-8297939,8298327-8298449,
           8298763-8298817,8299940-8300077,8300187-8300261,
           8300339-8300398,8301335-8301392,8301948-8302054,
           8302484-8302558,8302643-8302838,8304222-8304301,
           8308887-8309757,8310672-8310679
          Length = 702

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +3

Query: 30  LFSEIVQYSQNRSHSIQDLQFKLSEIGQD--VGTRLLDLYFVRERNSKR 170
           L + + ++S     ++ D +   S++G D      +LDL+FVR R SKR
Sbjct: 323 LLTMVKKHSHLIGWTVVDAEDDASDVGMDDRFWHEMLDLFFVRGRVSKR 371


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,841,771
Number of Sequences: 37544
Number of extensions: 238787
Number of successful extensions: 523
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)