Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00708
         (575 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117195-11|CAB55019.1|  185|Caenorhabditis elegans Hypothetical...   108   3e-24
Z66515-2|CAA91353.1|  543|Caenorhabditis elegans Hypothetical pr...    29   3.1  
S66757-1|AAB28819.1|  581|Caenorhabditis elegans Egl-43 protein.       29   3.1  
U40953-3|AAB52650.1|  342|Caenorhabditis elegans Hypothetical pr...    27   7.2  

>AL117195-11|CAB55019.1|  185|Caenorhabditis elegans Hypothetical
           protein Y57A10A.16 protein.
          Length = 185

 Score =  108 bits (259), Expect = 3e-24
 Identities = 45/77 (58%), Positives = 59/77 (76%)
 Frame = +2

Query: 257 ANDDERTYYIFEKDALVNKFISVPKDKGSLNCAIFNAGIIEAVLTRSGFPAKVTAHWHKG 436
           +NDD  TY + EKD +VN +ISVP+DKG LNCA F AGI+EA+L  + F  KVTAHWH G
Sbjct: 103 SNDDHCTYLLIEKDPMVNTYISVPRDKGVLNCAAFAAGIVEAILESASFKCKVTAHWHNG 162

Query: 437 TTYMVKFDDSVITRDKT 487
           T Y+++FD+SVI R+ +
Sbjct: 163 TAYVIQFDESVIARENS 179



 Score =  104 bits (250), Expect = 4e-23
 Identities = 47/84 (55%), Positives = 66/84 (78%)
 Frame = +3

Query: 3   EVSLAFYALLFSEIVQYSQNRSHSIQDLQFKLSEIGQDVGTRLLDLYFVRERNSKREIKL 182
           E++L+ +A+LFSE+V Y+QNRS ++ D+  K++  G+ VG R+ D+  +RE+  KRE KL
Sbjct: 18  EINLSTFAVLFSEMVLYAQNRSETVTDIHDKIASYGKQVGLRMFDIITLREKGYKRETKL 77

Query: 183 LNMLLFIKSTLWKVLFGKEADKLE 254
           L ML+FIKST+WK LFGKEADKLE
Sbjct: 78  LGMLMFIKSTVWKNLFGKEADKLE 101


>Z66515-2|CAA91353.1|  543|Caenorhabditis elegans Hypothetical
           protein R53.3a protein.
          Length = 543

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -2

Query: 448 HVCCSLVPVCCHLCWKS 398
           H+ CSL P  CHLC KS
Sbjct: 179 HIHCSLKPFRCHLCPKS 195


>S66757-1|AAB28819.1|  581|Caenorhabditis elegans Egl-43 protein.
          Length = 581

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -2

Query: 448 HVCCSLVPVCCHLCWKS 398
           H+ CSL P  CHLC KS
Sbjct: 179 HIHCSLKPFRCHLCPKS 195


>U40953-3|AAB52650.1|  342|Caenorhabditis elegans Hypothetical
           protein F53B1.4 protein.
          Length = 342

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -2

Query: 331 FWYTYKLVYKSIFLENIVGP 272
           +W++YKL Y  + + N+ GP
Sbjct: 178 YWHSYKLPYVMVRMNNVYGP 197


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,821,671
Number of Sequences: 27780
Number of extensions: 234613
Number of successful extensions: 521
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)