Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00708
         (575 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   2.9  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   3.8  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    21   6.6  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   6.6  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   8.7  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 400 ISSKGDSTLAQGNNIHGQVRRFSNHQRQN 486
           +SS  DS++  G N   QV R  +  RQN
Sbjct: 345 LSSVRDSSIICGGNKRSQVFRGRDANRQN 373


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +1

Query: 289 RERCSCKQVYKCTKRQGFIKLCHLQCW 369
           RE+ S K+  K TK    +    L CW
Sbjct: 606 REKSSAKKERKATKTLAIVLGVFLICW 632


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -2

Query: 448 HVCCSLVPVCCHLCWKS 398
           H+    +P  CHLC K+
Sbjct: 35  HIRTHTLPCKCHLCGKA 51


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 302 LVNKFISVPKDKGSLNC 352
           LV +F+ VPKD   ++C
Sbjct: 535 LVYQFVDVPKDIIEIDC 551


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 11/50 (22%), Positives = 21/50 (42%)
 Frame = +2

Query: 284 IFEKDALVNKFISVPKDKGSLNCAIFNAGIIEAVLTRSGFPAKVTAHWHK 433
           IF         I  P  + + N  +F+  I + +L   G P +++  W +
Sbjct: 55  IFGNITTCTVIIKNPAMQTATNYYLFSLAISDLILLVLGLPNELSLFWQQ 104


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,708
Number of Sequences: 438
Number of extensions: 2617
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)