Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00705
         (710 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1556.04c |cdd1|pcd1|cytidine deaminase Ccd1|Schizosaccharomy...    28   1.1  
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce...    27   2.6  
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    26   4.6  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    26   6.1  

>SPAC1556.04c |cdd1|pcd1|cytidine deaminase Ccd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 133

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/43 (27%), Positives = 18/43 (41%)
 Frame = +1

Query: 409 CIATYECTMSYPLGHDYFKTTTCESARVGTTPCHFCREAVMRF 537
           C      T +  +G+  F      SA+   TPC  CR+ +  F
Sbjct: 57  CAERVAITKAVSMGYTKFMAIGVMSAKGRVTPCGICRQVIREF 99


>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +1

Query: 502 PCHFCREAVMRFGLKGGAAVVTILKTLELVSQGG 603
           P  F  E V+   L GG AVV +  TLE + Q G
Sbjct: 90  PSSFTGEDVVELQLHGGTAVVDV--TLEAIKQSG 121


>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -3

Query: 534 THYCFTAEMAGCGTHPRGLTRSSF 463
           TH C   +  G  TH RGLT   F
Sbjct: 419 THLCQVYKEVGLQTHERGLTSDQF 442


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 678 GGRAHSPSGVKWLLEPIDIHN 616
           GG  H P+ V WLL P DI++
Sbjct: 235 GGPLHDPNTVMWLLRP-DIYS 254


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,804,187
Number of Sequences: 5004
Number of extensions: 53867
Number of successful extensions: 84
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)