Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00705
         (710 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0798 + 7314885-7314953,7315324-7315387,7315489-7315677,731...    30   2.1  
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258     29   4.8  
01_06_0355 + 28657833-28660665,28660762-28661126                       28   6.4  

>12_01_0798 +
           7314885-7314953,7315324-7315387,7315489-7315677,
           7316430-7316625,7316727-7316953,7317177-7318134,
           7320104-7321307,7321517-7321876,7321965-7323195,
           7323334-7323599,7323738-7326335
          Length = 2453

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = -3

Query: 543 QAETHYCFTAEMAGCGTHP-RGLTRSSFEVVVA*RIRHCAFVCSDATVFGSRSALLQK 373
           Q E   C      GCG  P  GL +   E++      HC ++CS    + + S++L K
Sbjct: 820 QNELSICLAVFENGCGDSPIHGLFKDIAEMIET--AVHCIYLCSATNQWNTMSSILSK 875


>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
          Length = 874

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = -2

Query: 634 AHRHPQRKCATHLEIQVLRS*V*LQRLPHPSSRNALLLHGRNGRVWYPPA 485
           +H HP +  A  L   V      L RLP  +  + LL HG    V+YPP+
Sbjct: 21  SHSHPLQCKALELCFNVA-----LNRLPASAGASPLLGHGHGVGVYYPPS 65


>01_06_0355 + 28657833-28660665,28660762-28661126
          Length = 1065

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = -2

Query: 676 WTSSQPI--WC*VVTGAHRHPQRKCATHL 596
           WT++ P   W  V  G HRHP R  A  L
Sbjct: 56  WTAAAPYCGWLGVTCGGHRHPLRVTALEL 84


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,127,717
Number of Sequences: 37544
Number of extensions: 389553
Number of successful extensions: 648
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)