Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00703
         (812 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    28   1.4  
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    27   4.2  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    26   5.5  
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz...    25   9.7  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    25   9.7  

>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +1

Query: 553 INKIRRSYLLRYFSVFIYAQNMILYS*VLKAHFNLF 660
           ++K   SYL +YF  F YA++   Y   + A F+LF
Sbjct: 395 VHKNNNSYLDQYFLDFDYARDAFSYFKAIWAEFSLF 430


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +3

Query: 108 SCATWLTRRELTPHYLKMEREAESNLTRRWANA 206
           S   WL R E++P +L+++   +  L+  W++A
Sbjct: 407 SSEAWLLRTEMSPLHLRLKNAHKYVLSDNWSHA 439


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 558 QN*TFLFTKILLSLHLCAEYDI 623
           +N  FLFT ILL  +LC + D+
Sbjct: 777 RNQPFLFTNILLRFYLCLKDDV 798


>SPAC3A11.05c |kms1||meiotic spindle pole body protein
           Kms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1

Query: 731 IFTFNFHYTIFYSKDKVIIKSLLQNRLKCAFSTYEYNII 615
           +F   F +  FY  D ++   LLQ  L+  F+  E+ II
Sbjct: 557 LFYVLFLFACFYGLDYILCAELLQAFLRVVFTFCEHIII 595


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = -3

Query: 162 PSSGNEGSALYGSAMSRMMLKSQSRMRRGKSDISLSVQSGISRHVP 25
           PSS  +  +++ + +  +  KS     +  SD++ S Q+G   H P
Sbjct: 672 PSSKEKSGSMFFNTLRTVKDKSHVHDTQRSSDVNFSRQNGTRSHSP 717


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,029,067
Number of Sequences: 5004
Number of extensions: 57126
Number of successful extensions: 126
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)