Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00703
         (812 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0079 + 531617-531734,531987-532059,532152-532261,532400-53...    29   3.3  
07_03_1296 + 25583195-25584385                                         29   4.4  
07_03_1153 + 24398122-24398747,24399326-24399542,24399741-244002...    29   4.4  
06_01_0505 + 3639867-3640301,3640386-3640792,3641024-3641609,364...    29   4.4  
07_01_0586 - 4354613-4354996,4355537-4355662,4355752-4355827,435...    29   5.8  
04_03_0874 + 20467608-20468306,20468575-20468736,20470083-204701...    29   5.8  
11_06_0344 + 22540436-22540737,22541304-22543545                       28   7.7  

>05_01_0079 +
           531617-531734,531987-532059,532152-532261,532400-532543,
           532628-532736,532836-533182,533260-533333,533478-533782,
           534168-534294,534385-534414,534589-534837
          Length = 561

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +2

Query: 299 LEHCIAPFLDRCDADDDHRVTLA--EWGKCLELD 394
           L H +  FL  CD+ D H   L+  EW   L+LD
Sbjct: 322 LSHKVVVFLSTCDSVDFHHTVLSQLEWSPGLQLD 355


>07_03_1296 + 25583195-25584385
          Length = 396

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -3

Query: 195 NDA*GLIPPPAPSSGNEGSALYGSA 121
           N A  L PPPAP+SG + SA    A
Sbjct: 126 NPAPALAPPPAPASGGDASAAAADA 150


>07_03_1153 +
           24398122-24398747,24399326-24399542,24399741-24400220,
           24400801-24401007,24401112-24401249,24401317-24401538
          Length = 629

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = +2

Query: 311 IAPFLDRCDADDDHRVTLAEWGKCLELDELEMEERCDDFNENAEHYL 451
           +A  +++C A D ++V    W  C+E+ E   E         A  YL
Sbjct: 273 LASVIEKCKATDQNKVLCPPWSWCVEIAEAAFEANNSKLGLFALEYL 319


>06_01_0505 +
           3639867-3640301,3640386-3640792,3641024-3641609,
           3642185-3642244
          Length = 495

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -3

Query: 180 LIPPPAPSSGNEGSALYGSAMSRMMLKSQSRMRRGKSD 67
           L+PPPA ++G E +   GS+ S      + R RRG+ D
Sbjct: 35  LLPPPA-AAGREPARTRGSSSSLAGAAGERRRRRGEED 71


>07_01_0586 -
           4354613-4354996,4355537-4355662,4355752-4355827,
           4356444-4356651,4356813-4356906,4357430-4357504,
           4358200-4358622
          Length = 461

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 168 PAPSSGNEGSALYGSAMSRMMLKSQSRMRRGKSD 67
           PAP++  +G+A+Y S M     ++ +R  RG  D
Sbjct: 61  PAPAASPDGAAIYPSPMPAAAAEAAARWSRGYGD 94


>04_03_0874 +
           20467608-20468306,20468575-20468736,20470083-20470160,
           20470636-20470714,20470809-20470954,20471064-20471132,
           20471262-20471430,20471526-20471776
          Length = 550

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/29 (48%), Positives = 14/29 (48%)
 Frame = -3

Query: 174 PPPAPSSGNEGSALYGSAMSRMMLKSQSR 88
           PPP PSSGN G    GS  S       SR
Sbjct: 157 PPPKPSSGNNGLRRMGSGSSNNARIGSSR 185


>11_06_0344 + 22540436-22540737,22541304-22543545
          Length = 847

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 6   TFKSSITERAEKCLTALKARCLTSP 80
           T +S   ERAE+C + L  RC+  P
Sbjct: 299 TLQSGFEERAEECFSQLVQRCIIRP 323


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,274,352
Number of Sequences: 37544
Number of extensions: 406417
Number of successful extensions: 1182
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1182
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)