Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00702
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    28   1.1  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        27   2.5  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    26   4.4  

>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 552 INKIRRSYLLRYFSVFIYAQNMILYS*VLKAHFNLF 659
           ++K   SYL +YF  F YA++   Y   + A F+LF
Sbjct: 395 VHKNNNSYLDQYFLDFDYARDAFSYFKAIWAEFSLF 430


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
 Frame = +2

Query: 41   MPDCTESEMSDFPRRMRDWLFNIMRDMAARRELTPHYLKMEREAE-SNLTRRWANAAIW- 214
            +PDC  S    + + + +W+F +           P    +E+ +E  NL+      AIW 
Sbjct: 2362 VPDCDISRFYCYTKMLGEWMFTLTEKTKLLESFLPKD-SLEKFSELQNLSTGLHMQAIWD 2420

Query: 215  KWCDLDAQTNDRF 253
            KW     +T D++
Sbjct: 2421 KWHAFVPRTYDQW 2433


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 557 QN*TFLFTKILLSLHLCAEYDI 622
           +N  FLFT ILL  +LC + D+
Sbjct: 777 RNQPFLFTNILLRFYLCLKDDV 798


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,517,809
Number of Sequences: 5004
Number of extensions: 45842
Number of successful extensions: 98
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)