Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00702
         (686 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0079 + 531617-531734,531987-532059,532152-532261,532400-53...    29   2.6  
07_03_1153 + 24398122-24398747,24399326-24399542,24399741-244002...    29   3.5  
07_03_1296 + 25583195-25584385                                         29   4.6  
11_06_0344 + 22540436-22540737,22541304-22543545                       28   6.0  
08_01_0961 - 9622444-9622928,9623011-9623102,9623862-9624002,962...    28   8.0  
08_01_0355 - 3122374-3122520,3122912-3123047,3123124-3123221,312...    28   8.0  
04_03_0901 + 20699814-20701169                                         28   8.0  
02_04_0133 + 20101553-20103070                                         28   8.0  

>05_01_0079 +
           531617-531734,531987-532059,532152-532261,532400-532543,
           532628-532736,532836-533182,533260-533333,533478-533782,
           534168-534294,534385-534414,534589-534837
          Length = 561

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +1

Query: 298 LEHCIAPFLDRCDADDDHRVTLA--EWGKCLELD 393
           L H +  FL  CD+ D H   L+  EW   L+LD
Sbjct: 322 LSHKVVVFLSTCDSVDFHHTVLSQLEWSPGLQLD 355


>07_03_1153 +
           24398122-24398747,24399326-24399542,24399741-24400220,
           24400801-24401007,24401112-24401249,24401317-24401538
          Length = 629

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = +1

Query: 310 IAPFLDRCDADDDHRVTLAEWGKCLELDELEMEERCDDFNENAEHYL 450
           +A  +++C A D ++V    W  C+E+ E   E         A  YL
Sbjct: 273 LASVIEKCKATDQNKVLCPPWSWCVEIAEAAFEANNSKLGLFALEYL 319


>07_03_1296 + 25583195-25584385
          Length = 396

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -1

Query: 194 NDA*GLIPPPAPSSGNEGSA 135
           N A  L PPPAP+SG + SA
Sbjct: 126 NPAPALAPPPAPASGGDASA 145


>11_06_0344 + 22540436-22540737,22541304-22543545
          Length = 847

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 6   TFKSSITERAEKCLTALKARCLTSP 80
           T +S   ERAE+C + L  RC+  P
Sbjct: 299 TLQSGFEERAEECFSQLVQRCIIRP 323


>08_01_0961 -
           9622444-9622928,9623011-9623102,9623862-9624002,
           9624460-9624506,9624581-9624639,9624780-9624940,
           9625021-9625196,9625284-9625355,9625820-9625879,
           9625997-9626191
          Length = 495

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +3

Query: 36  EKCLTALKARCLTSPVACGTGFLTSCATWL 125
           + C   L   C  S   CG  F T CA +L
Sbjct: 319 DPCAICLDTECTVSAEGCGHEFCTKCALYL 348


>08_01_0355 -
           3122374-3122520,3122912-3123047,3123124-3123221,
           3123724-3123801,3123876-3123945,3124452-3124516,
           3124606-3124686,3124822-3124926,3125002-3125085,
           3125175-3125250,3125358-3125436,3125526-3125646,
           3125768-3125827
          Length = 399

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -1

Query: 377 LPHSARVTRWSSSASQRSRNGAMQCSRAISGA 282
           LP S +V RWSSSA+  +R  A    R +  A
Sbjct: 15  LPASLQVGRWSSSAAMSARPVAFSLRRPVLAA 46


>04_03_0901 + 20699814-20701169
          Length = 451

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 175 FRLPLHLQVMRGQLSTCSHVAHD 107
           FR P+ L VMR  +S C+ V +D
Sbjct: 41  FRCPISLDVMRSPVSLCTGVTYD 63


>02_04_0133 + 20101553-20103070
          Length = 505

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 175 FRLPLHLQVMRGQLSTCSHVAHD 107
           FR P+ L VMR  +S C+ V +D
Sbjct: 79  FRCPISLDVMRSPVSLCTGVTYD 101


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,780,330
Number of Sequences: 37544
Number of extensions: 367937
Number of successful extensions: 1019
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)