Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00702
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    24   1.6  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   2.7  
M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    23   3.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.3  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   6.3  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 13/55 (23%), Positives = 26/55 (47%)
 Frame = +2

Query: 86  MRDWLFNIMRDMAARRELTPHYLKMEREAESNLTRRWANAAIWKWCDLDAQTNDR 250
           M  WL  ++    A +++T   +  +R++ +NL         WK  D D  +++R
Sbjct: 1   MTKWLLLVVCLGIACQDVTSAAVNHQRKSANNLAHSMKVIYEWKHIDFDFGSDER 55


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/40 (22%), Positives = 21/40 (52%)
 Frame = +2

Query: 149 YLKMEREAESNLTRRWANAAIWKWCDLDAQTNDRFGPVTS 268
           ++K   + E + +++       +    D+QT D FGP+++
Sbjct: 564 FIKANSQTEVSNSKKLDRLDSLRGSTTDSQTEDNFGPLSN 603


>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -2

Query: 655 RLKCAFSTYEYNIIFCA*MKTEKYLSK*ERLILFIKI 545
           R + AF TYE  +      KT +YLS  ERL L + +
Sbjct: 10  RARTAF-TYEQLVALENKFKTTRYLSVCERLNLALSL 45


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 17  EYYGTCREMPDCTESEMSDFPRRMRD 94
           +Y    + MPD  E+E+SD    +RD
Sbjct: 74  QYARVQQSMPDGWETEISDQMLELRD 99


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +2

Query: 212 WKWCDLDAQTNDRFGPV 262
           WKW D+  +     GPV
Sbjct: 39  WKWNDIAKECEQFLGPV 55


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,994
Number of Sequences: 438
Number of extensions: 3537
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)