Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00701X
(468 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC839.05c |rps1701|rps17-1|40S ribosomal protein S17|Schizosac... 78 8e-16
SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S... 78 8e-16
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz... 27 1.4
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce... 26 2.5
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 26 2.5
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch... 26 2.5
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ... 25 4.4
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa... 25 4.4
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr... 25 5.8
SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy... 25 7.6
SPBC1703.11 |||optic atrophy 3 family protein|Schizosaccharomyce... 25 7.6
>SPBC839.05c |rps1701|rps17-1|40S ribosomal protein
S17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 131
Score = 77.8 bits (183), Expect = 8e-16
Identities = 35/51 (68%), Positives = 42/51 (82%)
Frame = +3
Query: 102 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVR 254
IEKYY RLTLDF TNKRI +E+AII +K LRNKIAG+ THLM+R++ VR
Sbjct: 17 IEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVR 67
Score = 68.5 bits (160), Expect = 5e-13
Identities = 35/57 (61%), Positives = 42/57 (73%)
Frame = +2
Query: 257 ISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQPATQ 427
IS KLQEEERER+D YVPEVS LE D + VD DTKDMLK L ++ I +++ PA Q
Sbjct: 69 ISFKLQEEERERKDQYVPEVSELEVDRVNVDQDTKDMLKSLGYDQI-PVRVLAPAPQ 124
>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
S17|Schizosaccharomyces pombe|chr 3|||Manual
Length = 132
Score = 77.8 bits (183), Expect = 8e-16
Identities = 35/51 (68%), Positives = 42/51 (82%)
Frame = +3
Query: 102 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVR 254
IEKYY RLTLDF TNKRI +E+AII +K LRNKIAG+ THLM+R++ VR
Sbjct: 17 IEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVR 67
Score = 68.9 bits (161), Expect = 4e-13
Identities = 33/46 (71%), Positives = 37/46 (80%)
Frame = +2
Query: 257 ISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNI 394
IS KLQEEERER+D YVPEVS LE D I VD DTKDMLK L +++I
Sbjct: 69 ISFKLQEEERERKDQYVPEVSELEKDKINVDQDTKDMLKALGYDSI 114
>SPAC1039.04 |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 27.1 bits (57), Expect = 1.4
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = -3
Query: 190 RGLVGMIAISSHILLFVSKSSVNLV*YFSIIIFAAFL 80
RG+V + AIS+ ++ F+ S++++ + + FA FL
Sbjct: 352 RGIVLIAAISTTMIGFIVYGSIDIMNHIGVSYFACFL 388
>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 26.2 bits (55), Expect = 2.5
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = -3
Query: 406 LQAINIVEVQHLQHILGVGVYFDDVMFESRHFWDIVVTPLTLL 278
L+ NI+E +++ + +YF+ M + +FW I P +L
Sbjct: 368 LEVKNIIEQRNVTTMENCNLYFNPEMPTTIYFWKIYSAPTWML 410
>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 26.2 bits (55), Expect = 2.5
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 162 EIAIIPTKPLRNKIAGFATHLMRRLRHSQVRESL 263
EIA++ TKP + I G RL S++R+ L
Sbjct: 209 EIAVVSTKPTDSGIVGVPGGHFCRLSQSEIRDYL 242
>SPBC215.08c |arg4||carbamoyl-phosphate synthase
Arg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1160
Score = 26.2 bits (55), Expect = 2.5
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -3
Query: 370 QHILGVGVYFDDVMFESRHFWDIVVTPLTLLFLKFDRD 257
Q L VG+ DD+ +R+ ++ TP++ L DRD
Sbjct: 172 QTALNVGIQLDDMGVFARNHVKVLGTPISTLKTSEDRD 209
>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 803
Score = 25.4 bits (53), Expect = 4.4
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 85 FLTVLVRTRPMAEVVQRCF 29
F T L R P++E+V RCF
Sbjct: 413 FKTSLYRDHPVSEIVGRCF 431
>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 528
Score = 25.4 bits (53), Expect = 4.4
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 208 PAILFLRGLVGMIAISSHILLFVSK 134
P I LRGLV A H+L F++K
Sbjct: 457 PIIAQLRGLVNESAPGKHVLTFLNK 481
>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 515
Score = 25.0 bits (52), Expect = 5.8
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 224 NEASQTLASARISIKLQEEERERRDNYVPE 313
NE+S +L S K +E+ NY+PE
Sbjct: 173 NESSLSLDSGESEKKSEEDNGNGEQNYIPE 202
>SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 386
Score = 24.6 bits (51), Expect = 7.6
Identities = 10/39 (25%), Positives = 21/39 (53%)
Frame = +2
Query: 287 ERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGL 403
+R D E + ++ + +DPD KD+ +++ N N +
Sbjct: 303 DRFDKVEEEYTPIKDERELIDPDQKDVFDLVNDNQFNDI 341
>SPBC1703.11 |||optic atrophy 3 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 218
Score = 24.6 bits (51), Expect = 7.6
Identities = 7/28 (25%), Positives = 17/28 (60%)
Frame = +2
Query: 266 KLQEEERERRDNYVPEVSALEHDIIEVD 349
+ + +E+ RRD + L+H+I+ ++
Sbjct: 102 RARRKEKNRRDEVAEAILGLQHEIVRIN 129
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,741,861
Number of Sequences: 5004
Number of extensions: 32407
Number of successful extensions: 104
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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