Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00701X
         (468 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000263-14|AAG00017.2|  130|Caenorhabditis elegans Ribosomal pr...    81   3e-16
Z37092-6|CAE46667.1|  334|Caenorhabditis elegans Hypothetical pr...    29   1.7  
Z37092-5|CAA85456.1|  336|Caenorhabditis elegans Hypothetical pr...    29   1.7  
Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical p...    29   2.2  
Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical pr...    29   2.2  
U28940-6|AAA68352.1|  925|Caenorhabditis elegans Hypothetical pr...    28   2.9  
U00052-7|AAK21422.2|  232|Caenorhabditis elegans Fatty acid/reti...    28   3.8  
Z81139-7|CAI46624.1|  358|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z73899-5|CAA98080.1|  372|Caenorhabditis elegans Hypothetical pr...    27   6.7  

>AF000263-14|AAG00017.2|  130|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 17 protein.
          Length = 130

 Score = 81.4 bits (192), Expect = 3e-16
 Identities = 35/51 (68%), Positives = 42/51 (82%)
 Frame = +3

Query: 102 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVR 254
           IEKYYTR+T DF  NKR+C+E+AII +KPLRNKIAG+ THLMRR+    VR
Sbjct: 17  IEKYYTRMTNDFHNNKRVCDEVAIIGSKPLRNKIAGYITHLMRRIERGPVR 67



 Score = 59.7 bits (138), Expect = 1e-09
 Identities = 30/47 (63%), Positives = 35/47 (74%), Gaps = 3/47 (6%)
 Frame = +2

Query: 257 ISIKLQEEERERRDNYVPEVSALEHD---IIEVDPDTKDMLKMLDFN 388
           ISIKLQEEERERRDNY+PE+S ++      I+VD DT DMLK   FN
Sbjct: 69  ISIKLQEEERERRDNYMPEISTVDPSQLTSIKVDTDTSDMLKAAGFN 115


>Z37092-6|CAE46667.1|  334|Caenorhabditis elegans Hypothetical
           protein F44F4.5b protein.
          Length = 334

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 19/90 (21%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
 Frame = -3

Query: 439 TIATLGSWLC*LQAINIVEVQHLQHILGVGVYFDDVMFESRHFWDIVVTPLTLLFLKFDR 260
           TI  + +++   +A+ I++++ + H     + +  ++F + H    +V   T L   F  
Sbjct: 33  TIVAIITFILTYKALFILKIRPIFHSSTKILLYTSLLFVNVHAVIFMVIQNTALIRSFTL 92

Query: 259 DSRTCECLRRLIKC-VANPAILFLRGLVGM 173
             + CE +R  ++C   N  ++F  G+ G+
Sbjct: 93  SDKPCEIMRTTLECRFQNHVLIF--GIAGV 120


>Z37092-5|CAA85456.1|  336|Caenorhabditis elegans Hypothetical
           protein F44F4.5a protein.
          Length = 336

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 19/90 (21%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
 Frame = -3

Query: 439 TIATLGSWLC*LQAINIVEVQHLQHILGVGVYFDDVMFESRHFWDIVVTPLTLLFLKFDR 260
           TI  + +++   +A+ I++++ + H     + +  ++F + H    +V   T L   F  
Sbjct: 33  TIVAIITFILTYKALFILKIRPIFHSSTKILLYTSLLFVNVHAVIFMVIQNTALIRSFTL 92

Query: 259 DSRTCECLRRLIKC-VANPAILFLRGLVGM 173
             + CE +R  ++C   N  ++F  G+ G+
Sbjct: 93  SDKPCEIMRTTLECRFQNHVLIF--GIAGV 120


>Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical
            protein F36A2.13 protein.
          Length = 2944

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
 Frame = +3

Query: 102  IEKYYTR-LTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRESLSNFRK 278
            +EKY+T  L+      +   EE AI  +KP   ++   +     R   S  RES+ + R 
Sbjct: 1573 LEKYFTSDLSFSEVLKRSKKEERAIATSKPDTKRVRRTSRRDTDRENGSDNRESMEDERS 1632

Query: 279  RSVRGVTTMSQKCLLSNMTSSK*TPTPR 362
               R   +     +  + T++   PTPR
Sbjct: 1633 AGDRASESQETLRIRHDSTATSTVPTPR 1660


>Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical protein
            F36A2.13 protein.
          Length = 2944

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
 Frame = +3

Query: 102  IEKYYTR-LTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRESLSNFRK 278
            +EKY+T  L+      +   EE AI  +KP   ++   +     R   S  RES+ + R 
Sbjct: 1573 LEKYFTSDLSFSEVLKRSKKEERAIATSKPDTKRVRRTSRRDTDRENGSDNRESMEDERS 1632

Query: 279  RSVRGVTTMSQKCLLSNMTSSK*TPTPR 362
               R   +     +  + T++   PTPR
Sbjct: 1633 AGDRASESQETLRIRHDSTATSTVPTPR 1660


>U28940-6|AAA68352.1|  925|Caenorhabditis elegans Hypothetical
           protein T24H7.2 protein.
          Length = 925

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +2

Query: 218 TFN-EASQTLASARISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDML-KMLDFNN 391
           +FN E SQ L     +  + +EE+ + ++ V  + A   D +  D  TKD    +L+  N
Sbjct: 702 SFNFECSQYLEETEFTDYMADEEKTKLEDSVKRIRAWLEDDVTKDTPTKDFTDNLLELKN 761

Query: 392 I 394
           +
Sbjct: 762 V 762


>U00052-7|AAK21422.2|  232|Caenorhabditis elegans Fatty acid/retinol
           binding proteinprotein 8 protein.
          Length = 232

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 15/59 (25%), Positives = 24/59 (40%)
 Frame = +2

Query: 206 WICHTFNEASQTLASARISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLD 382
           W CH FN A   ++ A+  ++   E  +  + +   V  L     E      + LK LD
Sbjct: 150 WACHIFNNAKSAVSGAKALLQDDSEAAKIEEAFPEAVKLLNSKKFEAYSIIVNNLKPLD 208


>Z81139-7|CAI46624.1|  358|Caenorhabditis elegans Hypothetical
           protein W05H5.5 protein.
          Length = 358

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +2

Query: 356 TKDMLKMLDFNNINGLQL 409
           T D+ KML+ NN+NGL+L
Sbjct: 107 TDDIGKMLNVNNLNGLEL 124


>Z73899-5|CAA98080.1|  372|Caenorhabditis elegans Hypothetical
           protein ZK829.7 protein.
          Length = 372

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
 Frame = -3

Query: 349 VYFDDVMFESRHFW---DIVVTPLTLLFLKFDRDSRTCECLRRLIKCVANPAILFLRGLV 179
           V++DD  FE        D+  T + ++F  F    RT   + R +KC+A   +LF+ GL 
Sbjct: 220 VHWDDSEFEEYLIMRTKDVARTGVNVVF-DFVTSPRT---VTRSLKCLAEGGVLFVGGLS 275

Query: 178 GM 173
           G+
Sbjct: 276 GL 277


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,473,993
Number of Sequences: 27780
Number of extensions: 176855
Number of successful extensions: 585
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)