Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00700X
(470 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0066 - 537729-538163 81 6e-16
10_07_0174 + 13815478-13815903 80 8e-16
10_03_0037 - 7292283-7292288,7295142-7295443,7295681-7295693 33 0.088
03_06_0261 + 32724726-32724738,32724836-32725278,32728132-32728137 33 0.088
10_01_0330 + 3614562-3614574,3614676-3615118,3617700-3617825,361... 33 0.12
05_02_0016 - 5610917-5611090,5613558-5614000,5614102-5614114 33 0.15
03_02_0943 + 12598616-12598789,12599790-12601250 29 1.9
09_02_0460 + 9567656-9567766,9567849-9567949,9568527-9568647,956... 29 2.5
11_01_0494 + 3804913-3805679,3806341-3806530 28 3.3
02_03_0064 + 14607975-14608925 28 3.3
05_01_0006 - 44159-44206,44805-44850,45730-45818,46377-46394,464... 28 4.4
09_04_0528 - 18348071-18348136,18348477-18351209 27 5.8
11_04_0376 - 16965504-16966101,16966212-16966416,16967175-169681... 27 7.6
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742... 27 7.6
>03_01_0066 - 537729-538163
Length = 144
Score = 80.6 bits (190), Expect = 6e-16
Identities = 33/51 (64%), Positives = 45/51 (88%)
Frame = +3
Query: 102 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVR 254
IEKYY+R+TLDF TNK++ EE++I+P+K LRNK+AGF+THLMRR++ VR
Sbjct: 17 IEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFSTHLMRRIQRGPVR 67
Score = 55.6 bits (128), Expect = 2e-08
Identities = 30/54 (55%), Positives = 39/54 (72%)
Frame = +2
Query: 257 ISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQP 418
IS+KLQEEERERR ++VP+ SALE D I VD +T DML L ++ G+ + QP
Sbjct: 69 ISLKLQEEERERRMDFVPDRSALEVDDIRVDKETLDMLTSLGMADLPGV-VRQP 121
>10_07_0174 + 13815478-13815903
Length = 141
Score = 80.2 bits (189), Expect = 8e-16
Identities = 33/51 (64%), Positives = 44/51 (86%)
Frame = +3
Query: 102 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVR 254
IEKYY+R+TLDF TNK++ EE++I+P+K LRNK+AGF THLMRR++ VR
Sbjct: 17 IEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFTTHLMRRIQRGPVR 67
Score = 55.6 bits (128), Expect = 2e-08
Identities = 28/53 (52%), Positives = 38/53 (71%)
Frame = +2
Query: 257 ISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQ 415
IS+KLQEEERERR ++VPE SALE + I VD +T +ML L ++ G++ Q
Sbjct: 69 ISLKLQEEERERRMDFVPEKSALEVEEIRVDKETMEMLAALGMADLPGVERQQ 121
>10_03_0037 - 7292283-7292288,7295142-7295443,7295681-7295693
Length = 106
Score = 33.5 bits (73), Expect = 0.088
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +2
Query: 203 CWICHTFNEASQTLASARISIKLQEEERERRDNYVPEVSALEHDIIEVDPD-TKDMLK 373
CW+ H E+ A+ R QE+E E D ++P S L ++++VD D +DML+
Sbjct: 33 CWVKHGEQESGSGAAADRSGAHNQEDENE-HDMFIP--SPLGGEMVDVDHDLLQDMLR 87
>03_06_0261 + 32724726-32724738,32724836-32725278,32728132-32728137
Length = 153
Score = 33.5 bits (73), Expect = 0.088
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +2
Query: 203 CWICHTFNEASQTLASARISIKLQEEERERRDNYVPEVSALEHDIIEVDPD-TKDMLK 373
CW+ H E+ +A+ R QE+E E D ++P S L +I++VD D ++ML+
Sbjct: 80 CWVKHGEQESGSGVAADRSGAHNQEDENE-HDMFIP--SLLGGEIVDVDHDLLQNMLR 134
>10_01_0330 +
3614562-3614574,3614676-3615118,3617700-3617825,
3618379-3618786,3618871-3619311,3619399-3619779
Length = 603
Score = 33.1 bits (72), Expect = 0.12
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +2
Query: 203 CWICHTFNEASQTLASARISIKLQEEERERRDNYVPEVSALEHDIIEVDPD-TKDMLK 373
CW+ H E+ A R QE+E E D ++P S L+ ++++VD D +DML+
Sbjct: 80 CWVKHGEQESGSGAAVDRSGAHNQEDEDE-HDMFIP--SPLDGEMVDVDHDLLQDMLR 134
>05_02_0016 - 5610917-5611090,5613558-5614000,5614102-5614114
Length = 209
Score = 32.7 bits (71), Expect = 0.15
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +2
Query: 203 CWICHTFNEASQTLASARISIKLQEEERERRDNYVPEVSALEHDIIEVDPD-TKDMLK 373
CW+ H E+ A+ R QE+E E D ++P S L ++++VD D +DML+
Sbjct: 80 CWVKHGEQESGSGAATDRSGAHNQEDEDE-HDMFIP--SPLGGEMVDVDHDLLQDMLR 134
>03_02_0943 + 12598616-12598789,12599790-12601250
Length = 544
Score = 29.1 bits (62), Expect = 1.9
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +2
Query: 266 KLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLD 382
K Q EE ++ + + + LEHD+I + +T D+LK L+
Sbjct: 58 KEQSEESKQPVDIKEQAAQLEHDLIIKEKETLDVLKELE 96
>09_02_0460 +
9567656-9567766,9567849-9567949,9568527-9568647,
9568733-9568792,9569022-9569089,9569469-9569535,
9569586-9569666,9570152-9570217,9570372-9570410,
9570527-9570609,9570712-9570823,9570902-9570982,
9571132-9571290,9571397-9571504,9571570-9571674,
9571765-9571905,9572007-9572147,9572205-9572426,
9573617-9573730,9573830-9574045,9574373-9574432,
9574513-9574626,9574735-9574820,9574904-9575012,
9575099-9575277,9575357-9575429
Length = 938
Score = 28.7 bits (61), Expect = 2.5
Identities = 22/77 (28%), Positives = 36/77 (46%)
Frame = +3
Query: 108 KYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRESLSNFRKRSV 287
+ Y +TL+F + + P + NKI GF+ ++ L + E F+KR
Sbjct: 154 RLYLEITLEFS--------VFLFPLFVIENKI-GFSNNVNVSLARNLAGEIAQEFQKRQD 204
Query: 288 RGVTTMSQKCLLSNMTS 338
G+TT S K L+ + S
Sbjct: 205 DGMTTDSLKELVEQIVS 221
>11_01_0494 + 3804913-3805679,3806341-3806530
Length = 318
Score = 28.3 bits (60), Expect = 3.3
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +3
Query: 201 IAGFATHLMRRLRHSQVRESLSNFRKRSVRGVTTMSQKCLLS 326
+ G+A RR HS + E+ + + R S++CLLS
Sbjct: 91 VLGYAVAERRRHHHSAIAEATPAYESEAERAHRESSKRCLLS 132
>02_03_0064 + 14607975-14608925
Length = 316
Score = 28.3 bits (60), Expect = 3.3
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 216 THLMRRLRHSQVRESLSNFRKRSVRGVTTMSQKCLLSNMT 335
TH+M + ES++ F +R RGV +S ++N+T
Sbjct: 126 THVMEVAGGCDISESITTFARRRQRGVCVLSGAGTVTNVT 165
>05_01_0006 -
44159-44206,44805-44850,45730-45818,46377-46394,
46490-46609,46702-46772,47038-47086,47567-47658,
47769-47811,47928-48049,48143-48426,48961-49148,
49220-49336,49516-49557,49991-50101,50530-50688,
50710-50769,50850-50927,51010-51103,51182-51483,
51659-51721,51808-51936
Length = 774
Score = 27.9 bits (59), Expect = 4.4
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = +2
Query: 257 ISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKML 379
++I++Q + +R + +V A E I DP+TK+++K +
Sbjct: 615 LAIEVQPLDDRKRKGEIVKVYANEQKKITCDPETKELIKKI 655
>09_04_0528 - 18348071-18348136,18348477-18351209
Length = 932
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -2
Query: 286 TLLFLKFDRDSRTCE-CLRRLIKCVANPA 203
T++ F R+ RT + CLR L+ C+ NPA
Sbjct: 897 TMMHSDFVRNLRTGKGCLRNLLTCLENPA 925
>11_04_0376 -
16965504-16966101,16966212-16966416,16967175-16968197,
16968241-16968892,16969025-16969387,16970095-16970451
Length = 1065
Score = 27.1 bits (57), Expect = 7.6
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -2
Query: 355 VGVYFDDVMFESRHFWDIVVTPL 287
V + FDDV E +W++++TP+
Sbjct: 252 VFLVFDDVWNERSDYWELLITPM 274
>01_06_1406 -
37073548-37073822,37073892-37074111,37074200-37074246,
37074404-37074576,37075161-37075238,37075751-37075813,
37075889-37075961,37076150-37076189,37076302-37076368,
37076719-37078472,37079128-37079230,37080041-37080078,
37080221-37080347,37081944-37082152
Length = 1088
Score = 27.1 bits (57), Expect = 7.6
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = -2
Query: 352 GVYFDDVMFESRHFWDIVVTPLTLLFLKFDRDSR 251
G+ F D+ RH W++ P ++ L++ +D+R
Sbjct: 818 GLKFWDLRDPYRHLWELTTAPRAVISLQWLKDAR 851
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,853,246
Number of Sequences: 37544
Number of extensions: 194902
Number of successful extensions: 528
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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