Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00699
         (759 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces p...    71   2e-13
SPAPYUG7.02c |sin1||stress activated MAP kinase interacting prot...    28   1.3  
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos...    27   2.9  
SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion transporter|...    26   5.1  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    25   8.9  
SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces pombe...    25   8.9  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    25   8.9  

>SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 285

 Score = 70.9 bits (166), Expect = 2e-13
 Identities = 34/69 (49%), Positives = 49/69 (71%)
 Frame = +1

Query: 442 KAQEELPERCEAFGRVSVTADFIVTLDEVIKITNRRVNAIEHVIIPRLERTLAYIISELD 621
           KA++   +  E   +++      V L +V+++TNRRVN+IEH+IIPRLE T+ YI SEL+
Sbjct: 135 KARQVYEKAVETLVQLASYQSAFVLLGDVLQMTNRRVNSIEHIIIPRLENTIKYIESELE 194

Query: 622 ELEREEFYR 648
           ELERE+F R
Sbjct: 195 ELEREDFTR 203



 Score = 70.1 bits (164), Expect = 3e-13
 Identities = 35/87 (40%), Positives = 58/87 (66%), Gaps = 2/87 (2%)
 Frame = +2

Query: 239 SCFLFAEAKFTTGD-FNQVVLQNVTKAQIKIRSKKDNVAGVTLPIFESYQDGS-DTYELA 412
           + F  AE  F  G+  N  + Q+V + ++++RSK++N++GV LP FE   D S D ++L 
Sbjct: 65  AAFSMAEVGFAMGNNINFEIQQSVKQPRLRVRSKQENISGVFLPTFEMNLDESIDDFQLT 124

Query: 413 GLARGGQQLAKLKKNFQSAVKLLVELA 493
           GL +GGQQ+ K ++ ++ AV+ LV+LA
Sbjct: 125 GLGKGGQQIQKARQVYEKAVETLVQLA 151



 Score = 64.5 bits (150), Expect = 2e-11
 Identities = 33/72 (45%), Positives = 47/72 (65%)
 Frame = +3

Query: 48  MSGKDRLAIFPSRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMGE 227
           M+ K R  +FP+R     +K RL GA  GH LLK+K++AL+ RFR I+  I + K  MG 
Sbjct: 1   MASKQRENVFPTRMTLTTMKTRLKGAQTGHSLLKRKSEALKKRFREIVVNIEQAKQKMGR 60

Query: 228 VMKEAAFSLLKL 263
           VM+ AAFS+ ++
Sbjct: 61  VMQIAAFSMAEV 72


>SPAPYUG7.02c |sin1||stress activated MAP kinase interacting protein
           Sin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
 Frame = +3

Query: 72  IFPSRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMGEVMK--EAA 245
           I PS    +    + +    G  +L K++      F+MI+SK  ETK    EV+   EAA
Sbjct: 589 IMPSESKNIFETPKTSSIHAGSIILCKQSKKSPCNFKMIVSKNRETKRYDFEVLSALEAA 648

Query: 246 FSLLKLSSQLETSTKL 293
             + ++ + + T  K+
Sbjct: 649 IIVSRIRALMNTVKKI 664


>SPBC119.15 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +1

Query: 505 FIVTLDEVIKITNRRVNAIEHVII 576
           F+   D+V+KI  +R   ++H++I
Sbjct: 87  FVTKFDQVLKILEKRAPTVDHILI 110


>SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 418 GPWWA-AACKAQEELPERCEAFGRVSVTADFIVTLDE 525
           G WW   +C  +EE+    +AFG   +T + I TL+E
Sbjct: 304 GTWWLDVSCPKEEEIRVLAKAFGIHPLTVEDI-TLEE 339


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2280

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +2

Query: 251 FAEAKFTTGDFNQVVLQNVTKAQ 319
           F+E +FTTG  ++++ Q VT A+
Sbjct: 562 FSENEFTTGWLDRLIAQKVTSAR 584


>SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +2

Query: 176 VPYDLEQNH*D*NPYG*SNERSCFLFAEAKFTTGDFNQVVLQN 304
           V Y LEQN    NPY  +N     L+    +TT D +  +++N
Sbjct: 342 VQYILEQNELGRNPYNTTNVLRAILWLVKAWTT-DISPEIIEN 383


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = +3

Query: 300  KMLPRLKSRLGPR---RTMLLVSPSQSLSHTRMVLIPMSWLV 416
            K +  L  RL PR   R M + SPS S + +  ++IP+S LV
Sbjct: 1222 KQMEALPERLRPRVKQRFMKIRSPSVSSATSVALMIPISTLV 1263


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,798,631
Number of Sequences: 5004
Number of extensions: 52600
Number of successful extensions: 159
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)