Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00699
(759 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1340 + 32766773-32767582 73 2e-13
12_01_0151 - 1158834-1159703,1159917-1160092,1160144-1162097,116... 29 4.0
05_07_0124 - 27852840-27853571,27853726-27853769,27854224-278542... 29 4.0
02_05_0862 - 32305562-32305654,32305935-32306033,32306178-323062... 29 4.0
01_06_1238 + 35646647-35646932,35647333-35647950,35648732-356490... 29 4.0
08_01_0906 + 8933230-8933797,8933894-8934543,8937956-8938615,893... 29 5.3
03_05_0803 + 27829438-27829461,27829558-27829643,27829960-278300... 29 5.3
02_05_0430 - 28923784-28923830,28923931-28924341,28924552-289249... 29 5.3
07_03_1198 + 24734985-24735169,24737897-24737975,24738070-247381... 28 7.0
11_06_0573 + 25088921-25089035,25089752-25089843,25089990-25091672 28 9.3
07_03_0525 - 19044978-19045508 28 9.3
03_02_1012 + 13207907-13207990,13209196-13209280,13209402-132101... 28 9.3
>04_04_1340 + 32766773-32767582
Length = 269
Score = 72.9 bits (171), Expect = 2e-13
Identities = 37/72 (51%), Positives = 49/72 (68%)
Frame = +1
Query: 433 AACKAQEELPERCEAFGRVSVTADFIVTLDEVIKITNRRVNAIEHVIIPRLERTLAYIIS 612
AAC+A + E ++ +TLDE IK TNRRVNA+E+V+ PRLE T++YI
Sbjct: 142 AACRAAHV--KAIEVLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPRLENTISYIKG 199
Query: 613 ELDELEREEFYR 648
ELDELERE+F+R
Sbjct: 200 ELDELEREDFFR 211
Score = 70.1 bits (164), Expect = 2e-12
Identities = 36/70 (51%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = +3
Query: 48 MSGK-DRLAIFPSRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMG 224
MSG+ RL + P+ ++K RL GA +GH LLKKK+DAL V+FR IL KI+ K MG
Sbjct: 1 MSGQTQRLNVVPTVTMLGVMKARLVGATRGHALLKKKSDALTVQFRAILKKIVAAKESMG 60
Query: 225 EVMKEAAFSL 254
E M+ ++FSL
Sbjct: 61 EAMRASSFSL 70
Score = 68.1 bits (159), Expect = 7e-12
Identities = 41/94 (43%), Positives = 56/94 (59%), Gaps = 9/94 (9%)
Frame = +2
Query: 239 SCFLFAEAKFTTGD-FNQVVLQNVTKAQIKIRSKKDNVAGVTLPIFESYQD--------G 391
S F AEAK+ GD VVLQ+V A +++RS ++NVAGV LP F + D
Sbjct: 66 SSFSLAEAKYVAGDGVRHVVLQSVRSASLRVRSHQENVAGVKLPKFTHFVDPAAGSAGPS 125
Query: 392 SDTYELAGLARGGQQLAKLKKNFQSAVKLLVELA 493
+ + L GLARGGQQ+A + A+++LVELA
Sbjct: 126 NASPSLTGLARGGQQVAACRAAHVKAIEVLVELA 159
>12_01_0151 -
1158834-1159703,1159917-1160092,1160144-1162097,
1162360-1162620,1162729-1162916,1164127-1164166
Length = 1162
Score = 29.1 bits (62), Expect = 4.0
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Frame = +3
Query: 48 MSGKDRLAIFPSRGAQML--IKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLM 221
M K +LA+F + A + IK R A V+ G + +A+ + + +KII +L+
Sbjct: 95 MRTKPKLAMFQLKMANKIKTIKNRFAAIVEQRGDVNTILNAIPIDHNVHKNKIISEPSLL 154
Query: 222 GEVMKEAAFSLLKLSSQL 275
G V + +S++L
Sbjct: 155 GNVDDSKIHMVEAISNEL 172
>05_07_0124 -
27852840-27853571,27853726-27853769,27854224-27854272,
27854753-27854857,27855257-27855366,27857165-27857823,
27858355-27858572
Length = 638
Score = 29.1 bits (62), Expect = 4.0
Identities = 19/61 (31%), Positives = 33/61 (54%)
Frame = -1
Query: 555 VDTSIRDLNNLVESDNEVCSDANSTKSFTALWKFFLSFASCCPPRAKPANS*VSEPSWYD 376
+ TSI DL + + +D +C + ++ +A K +S S PP + P+N+ SW+D
Sbjct: 579 ISTSIDDLVDDLLTDTSLCLNGQK-QTTSAKGKDNISSVSV-PPNSGPSNASDDFDSWFD 636
Query: 375 S 373
S
Sbjct: 637 S 637
>02_05_0862 -
32305562-32305654,32305935-32306033,32306178-32306259,
32307407-32307764,32308745-32309521,32309612-32309716,
32309803-32309911,32311016-32311024
Length = 543
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +3
Query: 564 ARNHSPAGTYTRVHHLRAGRA*A*GVLPSQEDPGQEEDYQGQGRSEKSRSPG 719
A + PA + RVH + G + G P E+ +EE+++G G + G
Sbjct: 11 ATDPDPAPSPLRVHGIGIGSHASRGTAPRGEEEEEEEEWRGDGDAGSEEEEG 62
>01_06_1238 +
35646647-35646932,35647333-35647950,35648732-35649032,
35649137-35649416,35649715-35649822,35650088-35650366,
35650805-35650963
Length = 676
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/44 (27%), Positives = 26/44 (59%)
Frame = +3
Query: 177 FRMILSKIIETKTLMGEVMKEAAFSLLKLSSQLETSTKLCYKML 308
F ++++ +I + + E + AAFS + + L+T T +C K++
Sbjct: 411 FPIVINSVIAGRYYVTEYLGSAAFSKVVQAHDLQTGTDVCLKII 454
>08_01_0906 +
8933230-8933797,8933894-8934543,8937956-8938615,
8939751-8939817,8940421-8940724,8942993-8942996,
8944539-8946449
Length = 1387
Score = 28.7 bits (61), Expect = 5.3
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = -1
Query: 609 DDVRECTFQP--GNDYVLNGVDTSIRDLNNLVESDNEVCSDANSTKSFTALWKFFLSFAS 436
D+ R Q G V+ V S+ + ++ E DN V S +T+S ++ + LS+
Sbjct: 780 DETRHILLQKCGGLPKVICAVAESLSMVGDIKEEDNLV-SKLAATRSLDDVFSWLLSYFR 838
Query: 435 CCPPRAKP 412
CP KP
Sbjct: 839 SCPDSLKP 846
>03_05_0803 +
27829438-27829461,27829558-27829643,27829960-27830088,
27830806-27830925,27831007-27831132,27831349-27831433,
27831538-27831648,27832215-27832308,27832448-27832728,
27832840-27832947,27833163-27833284,27833825-27834035,
27834149-27834376,27834591-27834680
Length = 604
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 636 GVLPSQEDP-GQEEDYQGQGRSEKSRSPGCRQRLARRGHQL 755
G +P +P G ED +G+ E S++ RLA+ HQL
Sbjct: 270 GRVPGNSEPAGLIEDKEGEDNKESSKTDESELRLAQLQHQL 310
>02_05_0430 -
28923784-28923830,28923931-28924341,28924552-28924963,
28925000-28925542,28925790-28925884,28926003-28927033,
28927304-28927452,28927483-28927523,28927594-28928206
Length = 1113
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +2
Query: 254 AEAKF-TTGDFNQVVLQNVTKAQIKIRSKKD 343
AE+KF G N ++QN+T+ ++ ++ KKD
Sbjct: 25 AESKFGEEGVTNDAIMQNLTQTELLVKEKKD 55
>07_03_1198 +
24734985-24735169,24737897-24737975,24738070-24738134,
24738214-24738313,24738429-24738470,24739062-24739100,
24739140-24739330,24739745-24739850
Length = 268
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Frame = +3
Query: 135 HGLLKKKADALQVRFRMILSKIIETKTL--MGEVMKEAAFSLLKLSSQ 272
+G+LK K DALQ R +L + ++T T+ + ++ + +SL + S+
Sbjct: 95 YGILKSKLDALQKSQRQLLGEQLDTLTIKELQQLEHQLEYSLKHIRSK 142
>11_06_0573 + 25088921-25089035,25089752-25089843,25089990-25091672
Length = 629
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 48 MSGKDRLAIFPSRGAQMLIKGRLAGAVKGHGLLKKKADALQV 173
+ DRLAI P + + G L +V+G G+ +K +L V
Sbjct: 153 LGADDRLAIVPFHSSVVDATGLLEMSVEGRGVASRKVQSLAV 194
>07_03_0525 - 19044978-19045508
Length = 176
Score = 27.9 bits (59), Expect = 9.3
Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Frame = +3
Query: 114 LAGAVKGHGLLKKKADALQVRFRM--ILSKIIETKTLMG-EVMKEAAF 248
LAGA G G +KK+A ++VR R+ I+S I T L +V+K + F
Sbjct: 110 LAGAGAGDGPVKKRAVRVRVRDRVGKIMSSISRTIHLTSRDVVKHSGF 157
>03_02_1012 + 13207907-13207990,13209196-13209280,13209402-13210186,
13210262-13210462,13210580-13210690,13211105-13211487,
13211594-13211702,13211786-13211866,13212088-13212156,
13212379-13212467,13212619-13212780,13212859-13212916,
13213143-13213373,13213516-13213662,13213779-13214333,
13214562-13214819,13215096-13215203,13215760-13215854,
13215946-13216102,13216466-13216666,13217542-13217670,
13218292-13218567
Length = 1457
Score = 27.9 bits (59), Expect = 9.3
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Frame = -3
Query: 358 DTSNIVLLGPNLDLSLGNIL*HNLVEVSSCELSFSKEKAASFIT-SPIRVLVSMILLKII 182
D+ + L + DL+ + L+ + E SF + K + + SP LV +++
Sbjct: 971 DSESTDLESTHNDLTTVRAVVRLLLSPTKAESSFLRTKIETGPSDSPYEALVLSHHERLV 1030
Query: 181 RNLT*RASAFFLRRPWPFTAPARRPLINIW 92
N+ LR + F PAR P IN+W
Sbjct: 1031 SNIR------LLRSTYAFIPPARAPPINVW 1054
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,898,943
Number of Sequences: 37544
Number of extensions: 364723
Number of successful extensions: 963
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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